Alignments for a candidate for argE in Azospirillum brasilense Sp245

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AZOBR_RS31030 AZOBR_RS31030 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>FitnessBrowser__azobra:AZOBR_RS31030
          Length = 398

 Score =  263 bits (673), Expect = 5e-75
 Identities = 146/374 (39%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           E+L  L+ F +     N D++ +IR +L   G++  ++   E  ++N++ATIGP +  G 
Sbjct: 19  ELLRDLIAFDTTSRNSNLDLIHYIRDHLAELGVSSTLVFNEERTKANLYATIGPMDRGGV 78

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
            +SGH DVVP  +  W+SDPF L     +L+GRGT DMKGF+AA LA  P   A  L  P
Sbjct: 79  CLSGHTDVVPVDDQDWSSDPFTLTERDGKLFGRGTADMKGFIAAALAMAPDFLAANLTTP 138

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           +H A SYDEE GC GVP ++ +L  +  +P   I+GEPT MR I  HKGK A R  V G 
Sbjct: 139 VHYAFSYDEELGCLGVPGLLTQLAGMAVKPRLCIVGEPTRMRVIVGHKGKVALRCRVHGH 198

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRLV-GGPFEHVFEPPYSSLQIGTVKGGQAVN 243
           + HSS   QG+NA+   A +++       R    GPF+H ++ PY+++  G ++GG A N
Sbjct: 199 ACHSSLAPQGVNAVEYAAELVSFLRGMGRRFAEQGPFDHDYDIPYTTVHTGVMEGGTARN 258

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAEAL--------TTLGFEVEWQELSAYPAL 295
           I+P     EFE R ++    A +L  +R  A+ L           GF   W+ LS  PAL
Sbjct: 259 IVPSDASFEFEIRHLADHPVAPMLKELRDFAKTLEPEMRAVRPDAGF--SWETLSDSPAL 316

Query: 296 SLEPDAPLAALLEELTGREALPAVSYGTEAGLFQR-AGIDAIICGPGDIGRAHKPDEYIL 354
              P++    L++ L  +     V++GTE  LF   A I A++CGPGDI +AHKPDEY+ 
Sbjct: 317 DTPPESEEVTLVKNLAEQNGHGKVAFGTEGALFTSIANIPAVVCGPGDIEQAHKPDEYVE 376

Query: 355 IDELMACRAMVEAL 368
           + EL      +  L
Sbjct: 377 LSELARAERFLHRL 390


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 398
Length adjustment: 30
Effective length of query: 344
Effective length of database: 368
Effective search space:   126592
Effective search space used:   126592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS31030 AZOBR_RS31030 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.27626.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27626.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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