Alignments for a candidate for uxuA in Azospirillum brasilense Sp245

Align mannonate dehydratase (EC 4.2.1.8) (characterized)
to candidate AZOBR_RS31370 AZOBR_RS31370 mannonate dehydratase

Query= BRENDA::Q1QT83
         (391 letters)



>FitnessBrowser__azobra:AZOBR_RS31370
          Length = 398

 Score =  449 bits (1155), Expect = e-131
 Identities = 222/394 (56%), Positives = 280/394 (71%), Gaps = 6/394 (1%)

Query: 1   MEHTWRWFGPDDPITLDEIRQTGATGIVTALHEIPNGEIWPEAAIAERKRLIEAS---GL 57
           ME TWRWFGPDD I L+ IRQTGATGIVTALH+IP G +W    I ERK +I A    GL
Sbjct: 1   MEQTWRWFGPDDVIRLNHIRQTGATGIVTALHQIPYGVVWSVEEIEERKAMIAADPSLGL 60

Query: 58  AWSVVESVPVHEDIKQGRGDCETHIARYQQTLRNLAACGIDVVCYNFMPVLDWTRTDLAW 117
            WSVVES+PVHE IK G GD       Y+Q+LRNLAACG+  VCYNFMP+LDWTRTDLA 
Sbjct: 61  RWSVVESLPVHESIKIGEGDLAPLFDNYRQSLRNLAACGVTTVCYNFMPILDWTRTDLAA 120

Query: 118 PLPGGGTALRFDQTAFAAFDLYLLERPGAEADYDATERDAARAYLDGLDESARQRLIDTI 177
           P+PGGGT+LRF+    AAFD+++LERPGAE D+       ARA+ D   E  ++ L+  I
Sbjct: 121 PVPGGGTSLRFNAHEHAAFDVFMLERPGAEDDHSPEVLARARAWFDKASEDDKKTLLANI 180

Query: 178 IAGLPGAEEHYSLARFREVIAEYAEIDAERLRDNLGHFLRAVVPVAEEVGIRLAIHPDDP 237
           +AGLPGA + Y +   R+++  Y ++    LR+ L  FLR V+P AEEVGIR+ IHPDDP
Sbjct: 181 MAGLPGAFDRYDIPGLRKMLDRYKDMSHGALRETLARFLREVIPTAEEVGIRMCIHPDDP 240

Query: 238 PRPLLGLPRVVSTPRDVQWILDAAPSPANGLTFCTGSYGVSAAIDLVAMGERFAERIYFA 297
           PRPL+GLPR+VS   D+ +I++   S ANG+TFCTGS G  A  D+ AM +RFA ++ FA
Sbjct: 241 PRPLMGLPRIVSNEDDLDFIVNVIDSEANGITFCTGSLGAGAKNDVPAMIKRFAPKVTFA 300

Query: 298 HLRATQRENDPRSFHESAHLDGDVDMVGVIKALVGEERRRERDGGP--RLPLRPDHGHHL 355
           HLR  +++ D  SF E+ HL GDVDMV V+  L+ E++RR+  G P  R+P RPDHGH L
Sbjct: 301 HLRNVKKDPD-GSFQEAEHLGGDVDMVSVVTTLLEEQKRRKDAGNPNWRIPFRPDHGHEL 359

Query: 356 LDDLSRDTRPGYPLIGRLKGLAELRGVETAIKQL 389
           LDD+ + T PGYP IGRL+GLAE+RGV TA+  +
Sbjct: 360 LDDVGKKTHPGYPAIGRLRGLAEIRGVMTAVASM 393


Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 488
Number of extensions: 23
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 398
Length adjustment: 31
Effective length of query: 360
Effective length of database: 367
Effective search space:   132120
Effective search space used:   132120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate AZOBR_RS31370 AZOBR_RS31370 (mannonate dehydratase)
to HMM TIGR00695 (uxuA: mannonate dehydratase (EC 4.2.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.24062.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24062.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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