Align mannonate dehydratase (EC 4.2.1.8) (characterized)
to candidate AZOBR_RS31370 AZOBR_RS31370 mannonate dehydratase
Query= BRENDA::Q1QT83 (391 letters) >FitnessBrowser__azobra:AZOBR_RS31370 Length = 398 Score = 449 bits (1155), Expect = e-131 Identities = 222/394 (56%), Positives = 280/394 (71%), Gaps = 6/394 (1%) Query: 1 MEHTWRWFGPDDPITLDEIRQTGATGIVTALHEIPNGEIWPEAAIAERKRLIEAS---GL 57 ME TWRWFGPDD I L+ IRQTGATGIVTALH+IP G +W I ERK +I A GL Sbjct: 1 MEQTWRWFGPDDVIRLNHIRQTGATGIVTALHQIPYGVVWSVEEIEERKAMIAADPSLGL 60 Query: 58 AWSVVESVPVHEDIKQGRGDCETHIARYQQTLRNLAACGIDVVCYNFMPVLDWTRTDLAW 117 WSVVES+PVHE IK G GD Y+Q+LRNLAACG+ VCYNFMP+LDWTRTDLA Sbjct: 61 RWSVVESLPVHESIKIGEGDLAPLFDNYRQSLRNLAACGVTTVCYNFMPILDWTRTDLAA 120 Query: 118 PLPGGGTALRFDQTAFAAFDLYLLERPGAEADYDATERDAARAYLDGLDESARQRLIDTI 177 P+PGGGT+LRF+ AAFD+++LERPGAE D+ ARA+ D E ++ L+ I Sbjct: 121 PVPGGGTSLRFNAHEHAAFDVFMLERPGAEDDHSPEVLARARAWFDKASEDDKKTLLANI 180 Query: 178 IAGLPGAEEHYSLARFREVIAEYAEIDAERLRDNLGHFLRAVVPVAEEVGIRLAIHPDDP 237 +AGLPGA + Y + R+++ Y ++ LR+ L FLR V+P AEEVGIR+ IHPDDP Sbjct: 181 MAGLPGAFDRYDIPGLRKMLDRYKDMSHGALRETLARFLREVIPTAEEVGIRMCIHPDDP 240 Query: 238 PRPLLGLPRVVSTPRDVQWILDAAPSPANGLTFCTGSYGVSAAIDLVAMGERFAERIYFA 297 PRPL+GLPR+VS D+ +I++ S ANG+TFCTGS G A D+ AM +RFA ++ FA Sbjct: 241 PRPLMGLPRIVSNEDDLDFIVNVIDSEANGITFCTGSLGAGAKNDVPAMIKRFAPKVTFA 300 Query: 298 HLRATQRENDPRSFHESAHLDGDVDMVGVIKALVGEERRRERDGGP--RLPLRPDHGHHL 355 HLR +++ D SF E+ HL GDVDMV V+ L+ E++RR+ G P R+P RPDHGH L Sbjct: 301 HLRNVKKDPD-GSFQEAEHLGGDVDMVSVVTTLLEEQKRRKDAGNPNWRIPFRPDHGHEL 359 Query: 356 LDDLSRDTRPGYPLIGRLKGLAELRGVETAIKQL 389 LDD+ + T PGYP IGRL+GLAE+RGV TA+ + Sbjct: 360 LDDVGKKTHPGYPAIGRLRGLAEIRGVMTAVASM 393 Lambda K H 0.321 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 488 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 391 Length of database: 398 Length adjustment: 31 Effective length of query: 360 Effective length of database: 367 Effective search space: 132120 Effective search space used: 132120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate AZOBR_RS31370 AZOBR_RS31370 (mannonate dehydratase)
to HMM TIGR00695 (uxuA: mannonate dehydratase (EC 4.2.1.8))
../bin/blast/fastacmd -i /tmp/list.2320.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2320.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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