Alignments for a candidate for trpA in Acidovorax sp. GW101-3H11

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate Ac3H11_1535 Tryptophan synthase alpha chain (EC 4.2.1.20)

Query= uniprot:H0BV16
         (269 letters)



>FitnessBrowser__acidovorax_3H11:Ac3H11_1535
          Length = 269

 Score =  498 bits (1283), Expect = e-146
 Identities = 255/269 (94%), Positives = 261/269 (97%)

Query: 1   MSRIASTFSALQAQGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMAD 60
           MSRI +TF  L+AQGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMAD
Sbjct: 1   MSRIQTTFEQLKAQGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMAD 60

Query: 61  GPVIQKAGEKALSLGIGMVQVLDHVREFRKRNNTTPVVLMGYANPVERYDQKHGEGAFVR 120
           GPVIQKAGEKAL LG+GMVQVLDHVREFRKRN TTPVVLMGYANPVERYDQ HGEGAFVR
Sbjct: 61  GPVIQKAGEKALGLGVGMVQVLDHVREFRKRNTTTPVVLMGYANPVERYDQVHGEGAFVR 120

Query: 121 DSAAAGVDGVLIVDYPPEECEAFAASLRAHGMDLIFLLAPTSTDERMAEVARVASGYVYY 180
           DSA AGVDGVLIVDYPPEECEAFAASL+A+GMDLIFLLAPTSTDERMA+VARVASGYVYY
Sbjct: 121 DSAEAGVDGVLIVDYPPEECEAFAASLQANGMDLIFLLAPTSTDERMAQVARVASGYVYY 180

Query: 181 VSLKGVTGSGALDTAAVEQMLPRIRQHVTIPVGVGFGIRDAATAQAIGKVADAVVIGSRI 240
           VSLKGVTGSGALDTAAVEQMLPRIRQHV IPVGVGFGIRDAATAQAIGKVADAVVIGSRI
Sbjct: 181 VSLKGVTGSGALDTAAVEQMLPRIRQHVHIPVGVGFGIRDAATAQAIGKVADAVVIGSRI 240

Query: 241 IQLIEDQEHAKVVPLTIDFLRGIRKALDA 269
           IQLIEDQEHAKVVPLTIDFLRGIRKALDA
Sbjct: 241 IQLIEDQEHAKVVPLTIDFLRGIRKALDA 269


Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 401
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 269
Length adjustment: 25
Effective length of query: 244
Effective length of database: 244
Effective search space:    59536
Effective search space used:    59536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate Ac3H11_1535 (Tryptophan synthase alpha chain (EC 4.2.1.20))
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.22119.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22119.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.