Alignments for a candidate for hisF in Pedobacter sp. GW460-11-11-14-LB5

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate CA265_RS03610 CA265_RS03610 imidazole glycerol phosphate synthase subunit HisF

Query= SwissProt::Q7SIB9
         (252 letters)



>FitnessBrowser__Pedo557:CA265_RS03610
          Length = 379

 Score =  278 bits (710), Expect = 2e-79
 Identities = 143/250 (57%), Positives = 179/250 (71%), Gaps = 1/250 (0%)

Query: 3   LAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAI 62
           L+KRI+PCLDV  GR VKGVNFV+LRDAGDPVE A  Y + GADELVFLDI+ATHE R  
Sbjct: 130 LSKRIIPCLDVKDGRTVKGVNFVDLRDAGDPVELAAQYAQQGADELVFLDITATHERRKT 189

Query: 63  LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFG 122
           ++++V  VA ++ IP T+GGG+  + DA  LL +GADK+S+NSAAVR P+LI +LA  FG
Sbjct: 190 MIEMVKSVARQLNIPFTIGGGITEIADAEALLNAGADKISINSAAVRNPKLIEDLAKTFG 249

Query: 123 AQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEG 182
            Q VVLA+D ++      VH+ GGR+ T L    W  +  +LGAGEILLTSMD DGTK G
Sbjct: 250 VQFVVLAVDTKYVDGKNMVHLNGGRLITELETENWIKQAEDLGAGEILLTSMDHDGTKAG 309

Query: 183 YDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPKLKRY 241
           +D  L   V + + +P+IASGGAG M HF E FQ A  +AALAASVFH+GEI IP LK+ 
Sbjct: 310 FDCGLLSKVNQMINIPIIASGGAGNMAHFTEVFQKANVDAALAASVFHYGEILIPDLKQE 369

Query: 242 LAEKGVHVRL 251
           L    + VR+
Sbjct: 370 LKRNNIPVRI 379


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 268
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 379
Length adjustment: 27
Effective length of query: 225
Effective length of database: 352
Effective search space:    79200
Effective search space used:    79200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate CA265_RS03610 CA265_RS03610 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.16854.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16854.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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