Alignments for a candidate for hisN in Pedobacter sp. GW460-11-11-14-LB5

Align Histidine biosynthesis bifunctional protein HisB; EC 3.1.3.15; EC 4.2.1.19 (characterized)
to candidate CA265_RS03625 CA265_RS03625 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase

Query= SwissProt::D2QPE6
         (382 letters)



>FitnessBrowser__Pedo557:CA265_RS03625
          Length = 377

 Score =  480 bits (1236), Expect = e-140
 Identities = 237/382 (62%), Positives = 285/382 (74%), Gaps = 5/382 (1%)

Query: 1   MQKIVFIDRDGTLIAEPQPDQQVDSLAKLDFIPKAISAMRKIAEDTTYELVMVTNQDGLG 60
           M+K++FIDRDGTL  EP  D+QVDS AKL F P+++  + KIA +  YELVMVTNQDGLG
Sbjct: 1   MKKVLFIDRDGTLNIEPD-DEQVDSFAKLKFYPRSLYYLSKIAAELDYELVMVTNQDGLG 59

Query: 61  TGSFPEDTFWPAHNKMMSTFAGENVNFAAVHIDRHFPHDNSSTRKPGVGMLTQYFEASYD 120
           T S PE+ FWP HN M+ TF GE V+F+ + IDR F  DN+ TRKPG  +LT+YF   YD
Sbjct: 60  TLSNPEENFWPIHNFMLDTFEGEGVHFSEIVIDRTFAKDNAPTRKPGTALLTKYFSEDYD 119

Query: 121 LTNSFVIGDRLTDVQLAVNLGAKAILFMPPNGLAAVQSADVSGLTEAMKQAIVLQTGDWD 180
           L NSFVIGDRL DV LA NLGAKAI     + L + ++ D     E +   I+L+T  W+
Sbjct: 120 LKNSFVIGDRLNDVVLAKNLGAKAIFLRQNDALGSTEALDKH---ETLLDVIILETKKWE 176

Query: 181 EIYEFLRLPARTALVERNTKETQIRVELNLDGRGRADMHTGLGFFDHMLDQVAKHSGADL 240
           +IY  L+  +R    ER T ET I + L+LDG G+A + TGL FFDHMLDQ+A+H   DL
Sbjct: 177 DIYNLLKAGSRKIHHERKTNETDITINLDLDGTGKAKIETGLNFFDHMLDQIARHGSVDL 236

Query: 241 AIHVNGDLHIDEHHTIEDTALALGEAYRRALGDKRGISRYGFLLPMDEALAQVGIDFSGR 300
            +   GDLHIDEHHTIEDT +ALGEA+ + LG+K GI RYGF LPMD+ LAQV IDF GR
Sbjct: 237 EVIAKGDLHIDEHHTIEDTGIALGEAFAKGLGNKLGIERYGFCLPMDDCLAQVAIDFGGR 296

Query: 301 PWLVWDAEFKREKIGDMPTEMFYHFFKSFSDTALCNLNIKVEGDNEHHKIEAIFKAFAKA 360
            W+VWDAEFKREK+GDMPTEMFYHFFKSFSD A CNLN+K EGDNEHHKIEAIFKAFAKA
Sbjct: 297 NWIVWDAEFKREKVGDMPTEMFYHFFKSFSDAAKCNLNVKAEGDNEHHKIEAIFKAFAKA 356

Query: 361 IKMAVRRDINELDNLPSTKGVL 382
           IKMA++RD  ++  LPSTKG+L
Sbjct: 357 IKMAIKRDAEKM-VLPSTKGLL 377


Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 451
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 377
Length adjustment: 30
Effective length of query: 352
Effective length of database: 347
Effective search space:   122144
Effective search space used:   122144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate CA265_RS03625 CA265_RS03625 (bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase)
to HMM TIGR01261 (hisB: histidinol-phosphatase (EC 3.1.3.15))

Software error:

../bin/blast/fastacmd -i /tmp/list.21304.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21304.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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