Alignments for a candidate for trpA in Pedobacter sp. GW460-11-11-14-LB5

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate CA265_RS05025 CA265_RS05025 tryptophan synthase subunit alpha

Query= uniprot:A0A3N7DTH5
         (255 letters)



>FitnessBrowser__Pedo557:CA265_RS05025
          Length = 255

 Score =  404 bits (1037), Expect = e-117
 Identities = 196/254 (77%), Positives = 222/254 (87%)

Query: 1   MNRINKLFQEKKNILSIYYTAGYPNLGDTVAIAEELERSGADLLEIGFPYSDPVADGPVI 60
           MNRI +LFQEKKNILSIYYTAGYPN GDT+ IAE LE+SGAD+LEIGFPYSDPVADGPVI
Sbjct: 1   MNRIKQLFQEKKNILSIYYTAGYPNTGDTLQIAEALEQSGADMLEIGFPYSDPVADGPVI 60

Query: 61  QASSKTALDGGMTLKLLFEQLKDLRKTVNIPVLLMGYVNPMLQYGVENFCKSCAEVGVDG 120
           QASSK +LD GMTL+LLFEQLKDLRK V IPVLLMGYVNP+LQ+GVE FC++CAEVGVDG
Sbjct: 61  QASSKQSLDQGMTLQLLFEQLKDLRKKVTIPVLLMGYVNPVLQFGVEKFCEACAEVGVDG 120

Query: 121 CIVPDLPMVEYEELYSGVFEANGLTNIFLVTPQTSTERIRKIDGLSNGFIYLLSSSATTG 180
           CIVPDLPMVEYEE Y   FE + L+N+FL+TPQT+ ERI KIDGL+NGFIYLLSSSATTG
Sbjct: 121 CIVPDLPMVEYEEFYKDCFEKHNLSNVFLITPQTAEERIHKIDGLTNGFIYLLSSSATTG 180

Query: 181 QNLQVSENTEAYFSRIAEMKLNNPTMIGFGISSKETFDKACQYANGAIIGSAFVKSLKSG 240
           +NL+V   TEAYFSRI  + L NPTMIGFGIS K+TFDKAC YANGAIIG+AFVK++  G
Sbjct: 181 KNLEVGNTTEAYFSRIKNLNLKNPTMIGFGISDKQTFDKACSYANGAIIGTAFVKAIADG 240

Query: 241 KVTDSVKDFMKTFK 254
            + +SV +FMK FK
Sbjct: 241 NLAESVSNFMKKFK 254


Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 320
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 255
Length adjustment: 24
Effective length of query: 231
Effective length of database: 231
Effective search space:    53361
Effective search space used:    53361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate CA265_RS05025 CA265_RS05025 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.2010.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2010.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.