Alignments for a candidate for gatB in Pedobacter sp. GW460-11-11-14-LB5

Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate CA265_RS09170 CA265_RS09170 glutaminyl-tRNA synthase (glutamine-hydrolyzing) subunit B

Query= SwissProt::Q9RF06
         (475 letters)



>FitnessBrowser__Pedo557:CA265_RS09170
          Length = 487

 Score =  398 bits (1023), Expect = e-115
 Identities = 209/475 (44%), Positives = 299/475 (62%), Gaps = 5/475 (1%)

Query: 3   FETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRA 62
           FE V GLE+HV+L T++K+FS   A FGA PN N + + LA PG LP +NK  V  A+R 
Sbjct: 12  FELVSGLEIHVQLNTNTKIFSADSASFGALPNQNISTVSLALPGALPKLNKEVVAKAIRI 71

Query: 63  AMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEV-DGETKRIGITRL 121
            +ALN  I   + FDRKNYFY D PK YQI+Q +QPI  NG++++++ DG TK+IGI R+
Sbjct: 72  GLALNCTINQTNHFDRKNYFYADLPKGYQITQDNQPICVNGFLELQLADGSTKKIGINRI 131

Query: 122 HMEEDAGKSTHKGE--YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGV 179
           H+EEDAGKS H  +  YSLVDLNR G PLIEIV+EPDIRS +EA   L ++R ++++  V
Sbjct: 132 HLEEDAGKSIHDQDDNYSLVDLNRAGVPLIEIVTEPDIRSSEEASVLLSEIRKLVRHLNV 191

Query: 180 SDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSGG 239
           SD  MEEGSLRCDANIS+RP G  +FGT+ E+KNLNS   VR+ +++E  RQ E +  GG
Sbjct: 192 SDGNMEEGSLRCDANISIRPQGSTEFGTRCEVKNLNSMRNVRRAMDFEFGRQVEVISEGG 251

Query: 240 EIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDER 299
           +I Q T  FD   G T  MR KE ++DYRYF +PD+ P++I DAW   ++  +P LP+E 
Sbjct: 252 KIIQSTLNFDADKGTTSPMRTKEEANDYRYFSDPDLQPIHISDAWLAEIKSLMPALPNEI 311

Query: 300 KAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVEL 359
             + V+E G+   DA +     ++ ++F        + K   NWL+G +   LN+  + +
Sbjct: 312 SKQMVSEFGISKADATLFAEDLDLLNYFNQAQSAVHNKKSLINWLIGPIRAVLNEKGMAI 371

Query: 360 LDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAK--QIMEDNGLVQISDEAT 417
            D K+ P  LA  I L++D  ++ +IA +          NAK   + +   L+   +   
Sbjct: 372 TDFKVNPAQLAEAINLVDDKKITQQIAIQQLLPAVELEANAKVTDLAQSLNLLISENGDE 431

Query: 418 LLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQEL 472
           L  F++E L+   Q VE YK GK   +G  VG +MK +KG+A+ + +N+L+ ++L
Sbjct: 432 LSSFIDEVLNKYPQQVEAYKKGKKGVLGLFVGDVMKLAKGKADAKKLNELILEKL 486


Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 615
Number of extensions: 23
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 487
Length adjustment: 34
Effective length of query: 441
Effective length of database: 453
Effective search space:   199773
Effective search space used:   199773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate CA265_RS09170 CA265_RS09170 (glutaminyl-tRNA synthase (glutamine-hydrolyzing) subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.1563.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1563.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.