Alignments for a candidate for aroB in Pedobacter sp. GW460-11-11-14-LB5

Align 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 (uncharacterized)
to candidate CA265_RS11615 CA265_RS11615 3-dehydroquinate synthase

Query= curated2:A6LEZ7
         (353 letters)



>FitnessBrowser__Pedo557:CA265_RS11615
          Length = 352

 Score =  260 bits (664), Expect = 4e-74
 Identities = 149/335 (44%), Positives = 196/335 (58%), Gaps = 8/335 (2%)

Query: 16  LQDFLSSLKYDKLFILMDTNTKEKCFPLVEDI-PAFQKAPILVMEAGDMNKGFVSLAQIW 74
           L+  L S KY K+F+L D +T E C PL + +   F +  ++   AG+ NK       IW
Sbjct: 20  LKTLLESNKYSKVFVLADEHTSEICLPLFQSLLDDFSEFDLIETSAGEENKNIDFCIGIW 79

Query: 75  TALSNEGASRNSLLVNLGGGMITDMGGFAGATFKRGIRTINIPTTLMASVDAAVGGKTGI 134
             L +  A R SL++NLGGG+ITDMGGF  +T+KRGI  IN+PTTL++ VDA+VGGKTGI
Sbjct: 80  KTLLDFEADRKSLMINLGGGVITDMGGFIASTYKRGIDFINVPTTLLSQVDASVGGKTGI 139

Query: 135 NFNGLKNEVGSFYPPLCVFIDCDFLRTLDRDNILSGYAEMIKHGLISSMENYASVMLFDI 194
           + + +KN VG+F  P  VFI+  FL+TL +  +LSG+AEMIKHGLI     Y       +
Sbjct: 140 DIDNVKNMVGTFTLPQMVFIETAFLKTLPQRELLSGFAEMIKHGLIYDKPYYEK-----L 194

Query: 195 DTMNYSYLNSL-VGQSVAVKERIVEEDPKEQGIRKALNFGHTIGHAFESLSFLK-MRPIL 252
              NY   ++  + +SV +K  +V  DP E+ +RK LNFGHTIGHA E  S      P+ 
Sbjct: 195 KESNYLTPSAEDIYRSVEIKNEVVTIDPHEKNLRKILNFGHTIGHAVEGYSLANDENPLT 254

Query: 253 HGHAVAAGIVSELYLSHKLCGFPMEKLSQVVYYIKEYYPALFFDCTDYDTLYELMTHDKK 312
           HG A+A G V E  LS K       +L  +  YI   YP        +DTL ELM  DKK
Sbjct: 255 HGEAIAIGFVCEAALSIKNSTLTQAELKDISEYILSLYPKYHIKKESFDTLLELMQSDKK 314

Query: 313 NEGGIINFTLLKNVGDVRINQSVTKEKILESLDFY 347
           NE G I F+LL+  G    N  V+   IL SLD+Y
Sbjct: 315 NEDGNILFSLLETTGKCTFNCRVSTADILSSLDYY 349


Lambda     K      H
   0.321    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 393
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 352
Length adjustment: 29
Effective length of query: 324
Effective length of database: 323
Effective search space:   104652
Effective search space used:   104652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate CA265_RS11615 CA265_RS11615 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.20337.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20337.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.