Alignments for a candidate for aroA in Pedobacter sp. GW460-11-11-14-LB5

Align 3-phosphoshikimate 1-carboxyvinyltransferase; EC 2.5.1.19 (characterized, see rationale)
to candidate CA265_RS11640 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase

Query= uniprot:L0FR45
         (405 letters)



>FitnessBrowser__Pedo557:CA265_RS11640
          Length = 422

 Score =  342 bits (877), Expect = 1e-98
 Identities = 194/406 (47%), Positives = 259/406 (63%), Gaps = 25/406 (6%)

Query: 17  IPLPSSKSESNRVLIVDALTEGQNQISNLAEARDTQTMIRLL----------AEDPETLD 66
           I L  SKSE NR LI+ AL++   ++ NL+ A DT T+  +L           ++ +T+D
Sbjct: 19  IQLTGSKSECNRALIISALSKKLVKVENLSNAADTVTLNGILNNLEEELEVEIQESKTVD 78

Query: 67  VLDAGTTMRFLTAYAALTNRRKTLTGTPRMCERPIGILVDALRAIGAKIEYKGKEGYPPM 126
           V  AGT MRFL+AY +  N    LTGT RM +RPIGIL +AL+ IGA I Y   EG+PP+
Sbjct: 79  VGPAGTAMRFLSAYLSAKNGNFLLTGTERMKQRPIGILAEALKTIGADISYAEAEGFPPL 138

Query: 127 ETLGFEKQLTNKVQIRGDVSSQYISALLMNAPLLPEGLTLELTGKIGSKTYITMTLELMK 186
             +G   Q T +V+I+GD+SSQYISALLM AP+LP+GLTLE+ G++ SK Y+ MTL+++ 
Sbjct: 139 NIVGPLNQKTAEVKIKGDISSQYISALLMIAPILPQGLTLEIEGELTSKPYVDMTLDMLA 198

Query: 187 QFGIAYSFEGNTISIAPQSYKNTSFAVESDWSGASYWFSLLACADEGSFFLKGLKENSLQ 246
           + GIA+S+ GN+ISI PQ++K  +  VE DWS ASYW+S+ A ADE    L  LKE SLQ
Sbjct: 199 EVGIAHSWNGNSISIKPQAFKPGTLVVEPDWSAASYWYSIAALADEAEISLPALKEKSLQ 258

Query: 247 GDSKIVEIMDKLGVQSEFKDDGILLTKKAITGLG-------SYDFTHCPDLAQTVAVTCA 299
           GDS+I  IM   G+ +   D+GI     AI+ LG         D   CPDLAQT+ V  A
Sbjct: 259 GDSQIKNIMKIFGIATSKTDNGI-----AISNLGLSLDTKEVLDLKTCPDLAQTIVVIAA 313

Query: 300 LIGQKSQFTGLESLRIKETDRIYALQQELAKFNAKLEEGENGAFTV-IPSTDIPANVTIE 358
            +G+   FTGLE+L+IKETDRI ALQ ELAK    L E +N  +T+   +   P  +TI 
Sbjct: 314 ALGKNMAFTGLETLKIKETDRIAALQNELAKIGVTLTE-DNLVYTLNTDNLHFPDKITIA 372

Query: 359 TYDDHRMGMAFMPL-VTKTSVTLLDKEVVNKSYPSFWKHCVLAGIE 403
           TY+DHRM MAF PL +    V + + +VV KSYP +W+    AG +
Sbjct: 373 TYEDHRMAMAFAPLALLINEVEIEEMQVVEKSYPYYWEDLKKAGFD 418


Lambda     K      H
   0.316    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 18
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 422
Length adjustment: 31
Effective length of query: 374
Effective length of database: 391
Effective search space:   146234
Effective search space used:   146234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate CA265_RS11640 CA265_RS11640 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.30221.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30221.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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