Align chorismate synthase (EC 4.2.3.5) (characterized)
to candidate CA265_RS11645 CA265_RS11645 chorismate synthase
Query= BRENDA::B5AAU3 (442 letters) >FitnessBrowser__Pedo557:CA265_RS11645 Length = 365 Score = 370 bits (950), Expect = e-107 Identities = 192/362 (53%), Positives = 245/362 (67%), Gaps = 3/362 (0%) Query: 54 AGNIFGDYFQVATYGESHGGGVGCVISGCPPRIPLTEEDMQGDLDRRRPGQSRITTPRKE 113 AGN FG F++ T+GESHG +G +I GCP ++ + + +Q +LD+R+PGQS+ITT RKE Sbjct: 2 AGNSFGQLFRITTFGESHGVAIGVIIDGCPAQLDIDMDFIQSELDKRKPGQSKITTQRKE 61 Query: 114 TDTCKILSGTYEGMTTGTPIHVFVPNTDQRGGDYTEMAKAYRPSHADLTYDLKYGVRSVQ 173 +DT +ILSG +EG +TGTPI + +PN DQR DY YRPSHAD YD KYG+R + Sbjct: 62 SDTVQILSGVFEGKSTGTPIALLIPNEDQRSKDYGHNVDVYRPSHADYVYDAKYGIRDHR 121 Query: 174 GGGRSSARETIGRVAAGAVAKKILKLKCGVEILAFVSKVHQVVLPEDAVDYETLTLDQIE 233 GGGRSSARET RVAAGA+AK LK + G+EI A V+ V + P + + L E Sbjct: 122 GGGRSSARETAARVAAGAIAKLFLKQQ-GIEIFAHVTSVGTIEAPNLESNDLSALLQIRE 180 Query: 234 SNICRCPDPEYAQKMIDAIDKVRINGNSIGGVVTCIARNVPRGLGSPVFDKLEALLAKAM 293 NI RC DP A +MI+ ID VR +G+++GG + C+ + P GLG PVFDKL A L KAM Sbjct: 181 ENIVRCADPATAHEMIEFIDSVRKDGDTVGGKIGCVVKGCPAGLGEPVFDKLHADLGKAM 240 Query: 294 LSLPASKGFEIGSGFAGTDLTGSEHND--EFYMDEGGNVRTRTNRSGGVQGGISNGETIY 351 LS+ A GFE GSGFAG++L GS+HND + + +T TN +GG+ GGISNG I Sbjct: 241 LSINAVHGFEYGSGFAGSELRGSQHNDIPQPKAADSKVFKTTTNYAGGILGGISNGMDIT 300 Query: 352 FKVAFKPTATIGKKQNTVTRDHEDIELLTRGRHDPCVVPRAVPMVETMAALVLMDQLMAH 411 FKVAFKP ATI Q T+ E E+ +GRHDPCVVPRAV +VE MAALVL DQ + + Sbjct: 301 FKVAFKPVATIMHNQQTINAAGEASEIKGKGRHDPCVVPRAVVIVEAMAALVLADQFLRN 360 Query: 412 VA 413 A Sbjct: 361 KA 362 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 436 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 442 Length of database: 365 Length adjustment: 31 Effective length of query: 411 Effective length of database: 334 Effective search space: 137274 Effective search space used: 137274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate CA265_RS11645 CA265_RS11645 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))
../bin/blast/fastacmd -i /tmp/list.25283.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25283.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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