Alignments for a candidate for asd in Pedobacter sp. GW460-11-11-14-LB5

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate CA265_RS15395 CA265_RS15395 aspartate-semialdehyde dehydrogenase

Query= metacyc::MONOMER-6564
         (346 letters)



>FitnessBrowser__Pedo557:CA265_RS15395
          Length = 329

 Score =  295 bits (754), Expect = 1e-84
 Identities = 160/342 (46%), Positives = 224/342 (65%), Gaps = 13/342 (3%)

Query: 5   LHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESF 64
           + VAVVGATG VG  MLK LE+RNF +  L  ++S++S G ++TFKG++  +        
Sbjct: 1   MKVAVVGATGLVGTVMLKVLEERNFPLTELIPVASEKSVGKEITFKGKKFPIVSMDTAIS 60

Query: 65  EGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGI 124
              +IALFSAGG+ S   AP   + G  VIDN+SA+RMD    L+VPEVN  +L   N I
Sbjct: 61  MKPDIALFSAGGNTSLEHAPRFKEAGTTVIDNSSAWRMDPAIKLIVPEVNAHELSIDNKI 120

Query: 125 IANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIE 184
           IANPNCSTIQMV  L+P+   Y + +V+VSTYQ+V+G G +AV++L ++ + +       
Sbjct: 121 IANPNCSTIQMVVVLKPLHDKYKIKRVVVSTYQSVTGTGVKAVEQLMNERKGVDG----- 175

Query: 185 PEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVRL 244
           P+  P       Y+I  N +P ID F +NGYT EEMKM+ ET KIM    ++V AT VR+
Sbjct: 176 PKAYP-------YEIDLNVLPHIDVFMENGYTKEEMKMVKETNKIMSDDSIKVTATTVRI 228

Query: 245 PIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFVG 304
           P+  GHSESV IE + +D  + +++++L+++PG+ + DD +   YPMP DA  K++VFVG
Sbjct: 229 PVMGGHSESVNIEFE-NDFDLAEVRSILEKSPGIIVVDDVANLKYPMPKDAHEKDEVFVG 287

Query: 305 RIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           RIR+D       +LW+V+DNL KGAA N+VQIAE L +  LV
Sbjct: 288 RIRRDESAPKALNLWIVADNLRKGAATNAVQIAEYLIQKELV 329


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 285
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 329
Length adjustment: 28
Effective length of query: 318
Effective length of database: 301
Effective search space:    95718
Effective search space used:    95718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate CA265_RS15395 CA265_RS15395 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.3106.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3106.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.