Alignments for a candidate for ilvE in Pedobacter sp. GW460-11-11-14-LB5

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate CA265_RS15785 CA265_RS15785 branched-chain-amino-acid transaminase

Query= reanno::psRCH2:GFF445
         (307 letters)



>FitnessBrowser__Pedo557:CA265_RS15785
          Length = 296

 Score =  196 bits (497), Expect = 7e-55
 Identities = 113/297 (38%), Positives = 168/297 (56%), Gaps = 6/297 (2%)

Query: 1   MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYNTPDGTAIFRLQAHTD 60
           M   + + +I+ DG+  +  +++T +   +LHYG   FEG+RAY T +G  IF+  AH D
Sbjct: 1   MKYYNSNTIIYLDGQFEKAVNSSTDLYGQSLHYGYAAFEGIRAYKTHNGNRIFKAAAHFD 60

Query: 61  RLFDSAHIMNMPMPYSKEEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHV 120
           RL  S  + N+P P+ K+E+  AT   ++ N L+ AYIRP+VF          SG  V +
Sbjct: 61  RLERSCQLANIPFPWDKQELIAATYKLLQLNKLKDAYIRPLVFCHPNMKLNEPSG--VSI 118

Query: 121 IVAAWHWGAYMGDEALELGIKVRTSSFTRHHVNITMTRAKSNGAYINSMLALQEAISGGA 180
           ++ AW W AY G++ L+L +    S + R +       AK +G Y+NS+LA   A   G 
Sbjct: 119 LICAWEWDAYSGNKLLKLTV----SDYERPNPKSIPMEAKLSGNYVNSILATTAANIKGY 174

Query: 181 DEALMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRGTVLTLAAEHGLKIVEKR 240
           DEAL+LD  G+VAE SG NIF+ KDG ++TP +   L GITR TV  L     ++ +EK+
Sbjct: 175 DEALLLDMHGFVAEASGANIFLEKDGKLFTPSLGNILPGITRATVKELCTVLDIECIEKK 234

Query: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDGRAIGIGRRGPITEKLQKAYFDLVTGKTD 297
           +T +++  AD AF  GTA E+  I  +D        R  I   +Q+AY +LV  K +
Sbjct: 235 LTIEDLKNADSAFLCGTATEIAGIASIDDIVYRPIWRESIGYTIQRAYKNLVLEKVN 291


Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 205
Number of extensions: 5
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 296
Length adjustment: 27
Effective length of query: 280
Effective length of database: 269
Effective search space:    75320
Effective search space used:    75320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate CA265_RS15785 CA265_RS15785 (branched-chain-amino-acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.16673.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.