Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate CA265_RS15795 CA265_RS15795 dihydroxy-acid dehydratase
Query= BRENDA::Q9LIR4
(608 letters)
>FitnessBrowser__Pedo557:CA265_RS15795
Length = 560
Score = 672 bits (1734), Expect = 0.0
Identities = 335/559 (59%), Positives = 430/559 (76%), Gaps = 2/559 (0%)
Query: 51 NKLNKYSSRITEPKSQGGSQAILHGVGLSDDDLLKPQIGISSVWYEGNTCNMHLLKLSEA 110
++LNKYS T+ +Q +QA+L+G+GL+D D+ K Q+GI+S+ Y+GNTCNMHL L++
Sbjct: 2 SELNKYSKTFTQDPTQPAAQAMLYGIGLTDADMAKAQVGIASMGYDGNTCNMHLNDLAKD 61
Query: 111 VKEGVENAGMVGFRFNTIGVSDAISMGTRGMCFSLQSRDLIADSIETVMSAQWYDGNISI 170
VK+GV +VG FNTIGVSD +S GT GM +SL SRD+IADSIET+ Q+YDG ISI
Sbjct: 62 VKKGVWKNDLVGLVFNTIGVSDGMSNGTDGMRYSLVSRDVIADSIETICGGQYYDGIISI 121
Query: 171 PGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQDKTYDIVSAFQSYGEFVSGSISDEQ 230
PGCDKNMPG IMAM RL+RP IMVYGGTI PGH++ + +IVSAF++ G+ + G++S+E
Sbjct: 122 PGCDKNMPGAIMAMARLDRPSIMVYGGTIAPGHYKGEELNIVSAFEALGQKICGNLSEED 181
Query: 231 RKTVLHHSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLL 290
+ ++ H+CPGAGACGGMYTANTMASAIEA+GMSLPYSSS PA K EC AGKY+
Sbjct: 182 YQGIIKHTCPGAGACGGMYTANTMASAIEALGMSLPYSSSNPAISEEKKQECLDAGKYIK 241
Query: 291 ELLKMDLKPRDIITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDA 350
LL+ D+KP DI+T K+ NA+ S++ LGGSTNAVLH IA+ +++G+E+T DDFQ++SD
Sbjct: 242 ILLEKDIKPSDIMTRKAFENAIRSIIILGGSTNAVLHFIAMGKAIGIEITQDDFQRMSDV 301
Query: 351 VPFLADLKPSGKYVMEDIHKIGGTPAVLRYLLELGLMDGDCMTVTGQTLAQNLENVPSLT 410
P LAD KPSGKY+M+D+H+ GG PAVL+YLL GL+ GDC+TVTG+T+A+NL +V S+
Sbjct: 302 TPVLADFKPSGKYLMQDLHQYGGIPAVLKYLLNEGLLHGDCLTVTGKTVAENLADVKSIM 361
Query: 411 E-GQEIIRPLSNPIKETGHIQILRGDLAPDGSVAKITGKEGLYFSGPALVFEGEESMLAA 469
+ Q+II+ LS PIK TGH+QIL G+LA GSVAKI+GKEG F GPA VF+GE ++A
Sbjct: 362 DYDQKIIQKLSEPIKATGHLQILYGNLAEKGSVAKISGKEGEKFEGPARVFDGEHDLIAG 421
Query: 470 ISADPMSFKGTVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKECALLTDGRFSGGSHGF 529
IS+ + G V+VI+ GP G PGMPEML PTSAI+GAGLGK AL+TDGRFSGG+HGF
Sbjct: 422 ISSGRVQ-PGDVIVIKNSGPVGAPGMPEMLKPTSAIIGAGLGKSVALITDGRFSGGTHGF 480
Query: 530 VVGHICPEAQEGGPIGLIKNGDIITIDIGKKRIDTQVSPEEMNDRRKKWTAPAYKVNRGV 589
VVGHI PE+ +GG IGL+++ D I ID I+ QVS E + +RRK + PA KV +GV
Sbjct: 481 VVGHITPESYKGGLIGLVEDEDRILIDAVNNIINLQVSDEVIAERRKNYVQPALKVTKGV 540
Query: 590 LYKYIKNVQSASDGCVTDE 608
LYKY K V A+ GCVTDE
Sbjct: 541 LYKYAKTVSDAASGCVTDE 559
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1113
Number of extensions: 48
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 560
Length adjustment: 36
Effective length of query: 572
Effective length of database: 524
Effective search space: 299728
Effective search space used: 299728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Align candidate CA265_RS15795 CA265_RS15795 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.28054.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28054.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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