Alignments for a candidate for argH in Pedobacter sp. GW460-11-11-14-LB5

Align arginosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate CA265_RS18485 CA265_RS18485 argininosuccinate lyase

Query= reanno::Pedo557:CA265_RS18485
         (443 letters)



>FitnessBrowser__Pedo557:CA265_RS18485
          Length = 443

 Score =  880 bits (2275), Expect = 0.0
 Identities = 443/443 (100%), Positives = 443/443 (100%)

Query: 1   MKIWQKNIDVNQFVESFTVGKDRELDLQMAKFDVLGSLAHTQMLETINLLTAEELKTVQH 60
           MKIWQKNIDVNQFVESFTVGKDRELDLQMAKFDVLGSLAHTQMLETINLLTAEELKTVQH
Sbjct: 1   MKIWQKNIDVNQFVESFTVGKDRELDLQMAKFDVLGSLAHTQMLETINLLTAEELKTVQH 60

Query: 61  ELKNIYAEIEAGNFTIEDSVEDVHSQVEWLLTQRIGEAGKKIHSGRSRNDQVLVDLKLFF 120
           ELKNIYAEIEAGNFTIEDSVEDVHSQVEWLLTQRIGEAGKKIHSGRSRNDQVLVDLKLFF
Sbjct: 61  ELKNIYAEIEAGNFTIEDSVEDVHSQVEWLLTQRIGEAGKKIHSGRSRNDQVLVDLKLFF 120

Query: 121 RACIEDMVGQTSTLFNQLIELSNTHKDKLVPGYTHLQIAMPSSFGLWFGAYAESLADDME 180
           RACIEDMVGQTSTLFNQLIELSNTHKDKLVPGYTHLQIAMPSSFGLWFGAYAESLADDME
Sbjct: 121 RACIEDMVGQTSTLFNQLIELSNTHKDKLVPGYTHLQIAMPSSFGLWFGAYAESLADDME 180

Query: 181 LMLAAWKICNKNPLGSAAGYGSSFPLNRTLTTHLLGFETLNYNVVYAQMGRGKTERILAQ 240
           LMLAAWKICNKNPLGSAAGYGSSFPLNRTLTTHLLGFETLNYNVVYAQMGRGKTERILAQ
Sbjct: 181 LMLAAWKICNKNPLGSAAGYGSSFPLNRTLTTHLLGFETLNYNVVYAQMGRGKTERILAQ 240

Query: 241 AMSAVAATLAKMAMDVCLFINQNFGFISFPAELTTGSSIMPHKKNPDVFELIRSRCNKIQ 300
           AMSAVAATLAKMAMDVCLFINQNFGFISFPAELTTGSSIMPHKKNPDVFELIRSRCNKIQ
Sbjct: 241 AMSAVAATLAKMAMDVCLFINQNFGFISFPAELTTGSSIMPHKKNPDVFELIRSRCNKIQ 300

Query: 301 ALPNEIAMMITNLPSGYHRDLQLLKENLFPAITSLNECLEIATFMFQNITIKDDILKDKK 360
           ALPNEIAMMITNLPSGYHRDLQLLKENLFPAITSLNECLEIATFMFQNITIKDDILKDKK
Sbjct: 301 ALPNEIAMMITNLPSGYHRDLQLLKENLFPAITSLNECLEIATFMFQNITIKDDILKDKK 360

Query: 361 YDYLFSVEVVNDLALQGVPFREAYKIVGEQIENGSFAPSGQIHHTHEGSIGNLCNEQISA 420
           YDYLFSVEVVNDLALQGVPFREAYKIVGEQIENGSFAPSGQIHHTHEGSIGNLCNEQISA
Sbjct: 361 YDYLFSVEVVNDLALQGVPFREAYKIVGEQIENGSFAPSGQIHHTHEGSIGNLCNEQISA 420

Query: 421 AMQAVLSQFGFGKVNKAIEDLVK 443
           AMQAVLSQFGFGKVNKAIEDLVK
Sbjct: 421 AMQAVLSQFGFGKVNKAIEDLVK 443


Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 807
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 443
Length adjustment: 32
Effective length of query: 411
Effective length of database: 411
Effective search space:   168921
Effective search space used:   168921
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate CA265_RS18485 CA265_RS18485 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.10720.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10720.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.