Alignments for a candidate for proC in Pedobacter sp. GW460-11-11-14-LB5

Align pyrroline-5-carboxylate reductase (EC 1.5.1.2) (characterized)
to candidate CA265_RS18505 CA265_RS18505 pyrroline-5-carboxylate reductase

Query= reanno::Pedo557:CA265_RS18505
         (269 letters)



>FitnessBrowser__Pedo557:CA265_RS18505
          Length = 269

 Score =  517 bits (1331), Expect = e-151
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MKKIAIIGSGNIGLSLAKGLVKANYTTTKNIILTRRNTANLYKFAQERYKVTANNADAAA 60
           MKKIAIIGSGNIGLSLAKGLVKANYTTTKNIILTRRNTANLYKFAQERYKVTANNADAAA
Sbjct: 1   MKKIAIIGSGNIGLSLAKGLVKANYTTTKNIILTRRNTANLYKFAQERYKVTANNADAAA 60

Query: 61  DADVIILAVLPQQLNVVLEEIQSAINPAKHLVISVISGVSCAAVREKLDSNVQIIRAMPN 120
           DADVIILAVLPQQLNVVLEEIQSAINPAKHLVISVISGVSCAAVREKLDSNVQIIRAMPN
Sbjct: 61  DADVIILAVLPQQLNVVLEEIQSAINPAKHLVISVISGVSCAAVREKLDSNVQIIRAMPN 120

Query: 121 TAIAIGQSMTCIASDNASPQNLEDVTRMFETVGSVVKINEDLMTSATALCACGIAFFLRG 180
           TAIAIGQSMTCIASDNASPQNLEDVTRMFETVGSVVKINEDLMTSATALCACGIAFFLRG
Sbjct: 121 TAIAIGQSMTCIASDNASPQNLEDVTRMFETVGSVVKINEDLMTSATALCACGIAFFLRG 180

Query: 181 IRAASQGGVEIGFHADEALKMAVQTAKGAADLLLLHGTHPESEIDKVTSPKGCTIAGLNE 240
           IRAASQGGVEIGFHADEALKMAVQTAKGAADLLLLHGTHPESEIDKVTSPKGCTIAGLNE
Sbjct: 181 IRAASQGGVEIGFHADEALKMAVQTAKGAADLLLLHGTHPESEIDKVTSPKGCTIAGLNE 240

Query: 241 MEHNGYSSSLIKGIKLSALKAGNLYTKEG 269
           MEHNGYSSSLIKGIKLSALKAGNLYTKEG
Sbjct: 241 MEHNGYSSSLIKGIKLSALKAGNLYTKEG 269


Lambda     K      H
   0.316    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 269
Length adjustment: 25
Effective length of query: 244
Effective length of database: 244
Effective search space:    59536
Effective search space used:    59536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate CA265_RS18505 CA265_RS18505 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.668.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.668.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.