Alignments for a candidate for argB in Pedobacter sp. GW460-11-11-14-LB5

Align N-succinylglutamate kinase (EC 2.7.2.-) (characterized)
to candidate CA265_RS18510 CA265_RS18510 acetylglutamate kinase

Query= reanno::Btheta:352922
         (257 letters)



>FitnessBrowser__Pedo557:CA265_RS18510
          Length = 278

 Score =  278 bits (712), Expect = 7e-80
 Identities = 145/268 (54%), Positives = 190/268 (70%), Gaps = 17/268 (6%)

Query: 3   EKLTVIKVGGKIVEEEATLLQLLNDFAAISGHKVLVHGGGRSATKIAAQLGIESKMVNGR 62
           ++LT+IK+GG +++    L Q L DF A+ G K+LVHGGG+ AT++   LGIE+KM++GR
Sbjct: 4   KQLTIIKIGGNVIDNSENLHQFLLDFTALPGDKILVHGGGKIATELGESLGIEAKMIDGR 63

Query: 63  RITDAETLKVVTMVYGGLVNKNIVAGLQARGVNALGLTGADMNVIRSVKRPV-------- 114
           RITD ETL++VTMVY GL+NKN+VA LQA+G NA+GL+GAD NVIR+ KRPV        
Sbjct: 64  RITDIETLRIVTMVYAGLINKNMVAQLQAKGSNAIGLSGADGNVIRAKKRPVITKTYGAE 123

Query: 115 ------KEVDYGFVGDVEK--VDASLLADLIHKGVVPVMAPLTHDGQGNMLNTNADTIAG 166
                   +DYGFVGD+++  V ++ L  L+  G+VPV+  +THDG   +LNTNADTIA 
Sbjct: 124 SGPMAGAVIDYGFVGDLDENAVSSTTLESLLKAGLVPVLCAITHDGDTQLLNTNADTIAS 183

Query: 167 ETAKALSALFDVTLVYCFEKKGVLRDENDDDSVIPEITRAEFEQYVADGVIQGGMIPKLE 226
             A A+SAL++  LVYCFEKKGVL++ NDD SV+ EI   EFE   ADG +QGGMIPKL 
Sbjct: 184 SVAVAMSALYETRLVYCFEKKGVLKNVNDDGSVVREIKADEFEGLKADGTVQGGMIPKLH 243

Query: 227 NSFEAINAGVTEVVITLASAIKD-NEGT 253
           N+FEAI  GV+ V I  A  + +  EGT
Sbjct: 244 NAFEAIKKGVSAVYIGKADELAELAEGT 271


Lambda     K      H
   0.316    0.135    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 278
Length adjustment: 25
Effective length of query: 232
Effective length of database: 253
Effective search space:    58696
Effective search space used:    58696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate CA265_RS18510 CA265_RS18510 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.17234.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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