Alignments for a candidate for argG in Pedobacter sp. GW460-11-11-14-LB5

Align arginosuccinate synthetase (EC 6.3.4.5) (characterized)
to candidate CA265_RS18545 CA265_RS18545 argininosuccinate synthase

Query= reanno::Btheta:353286
         (402 letters)



>FitnessBrowser__Pedo557:CA265_RS18545
          Length = 395

 Score =  442 bits (1137), Expect = e-129
 Identities = 214/389 (55%), Positives = 285/389 (73%), Gaps = 1/389 (0%)

Query: 6   KKVVVAFSGGLDTSFTVMYLAKEKGYEVYAACANTGGFSEEQLKTNEENAYKLGAVKYVT 65
           KKVV+AFSGGLDTSF  +YLA+++G EV++   NTGGFS+E+L+  E+ AY LG   +  
Sbjct: 2   KKVVLAFSGGLDTSFCCIYLAQDRGLEVHSVIVNTGGFSDEELQEIEKRAYALGVKSHAV 61

Query: 66  LDVTQEYYEKSLKYMVFGNVLRNGTYPISVSSERIFQALAIARYANEIGADAIAHGSTGA 125
           +D T+ YYE  +KY+VFGNVL+N TYP+SVS+ER+ QA AIA Y  +IGAD +AHGSTGA
Sbjct: 62  VDETESYYEGCIKYLVFGNVLKNATYPLSVSAERVSQATAIANYVKKIGADYVAHGSTGA 121

Query: 126 GNDQIRFDMTFLVLAPNVEIITLTRDMALSRQEEIDYLNKHGFSADFTKLKYSYNVGLWG 185
           GNDQ+RFDM F +L P VEIIT  RD+ LSR+ EI+YL +HG      K +YS N GLWG
Sbjct: 122 GNDQVRFDMIFNILIPEVEIITPIRDLKLSREAEIEYLAQHGVEYSAEKARYSINKGLWG 181

Query: 186 TSICGGEILDSAQGLPETAYLKHVEKEGSEQLRLTFEKGELKAVNDETFDDPIQAIQKVE 245
           TS+ G E L S + LPE+A+   V +  S ++ LTFEKGEL A++ E    P++AIQK++
Sbjct: 182 TSVGGKETLTSHETLPESAWPTQVSETESRKVELTFEKGELVAIDGEKL-APVRAIQKLQ 240

Query: 246 EIGAAYGIGRDMHVGDTIIGIKGRVGFEAAAPMLIIGAHRFLEKYTLSKWQQYWKDQVAN 305
            I   +GIGRD+HVGDTIIGIKGRVGFEAA P+LII AH  LEK+TL+KWQ  WK+Q+++
Sbjct: 241 AIAQPFGIGRDIHVGDTIIGIKGRVGFEAAGPILIIKAHHTLEKHTLTKWQLSWKEQLSS 300

Query: 306 WYGMFLHESQYLEPVMRDIEAMLQESQRNVNGTAILELRPLSFSTVGVESEDDLVKTKFG 365
           +YG +LHE Q+ +P+MR+IEA L ++Q+ V+G   +EL P  F  +G+ES  DL+  KFG
Sbjct: 301 FYGNWLHEGQFHDPIMRNIEAFLADTQKFVSGKVFVELLPYRFQIIGIESNHDLMSNKFG 360

Query: 366 EYGEMQKGWTAEDAKGFIKVTSTPLRVYY 394
            YGEM   W+ ED KGF K+    + +++
Sbjct: 361 SYGEMNNAWSGEDVKGFSKIFGNQVMIWH 389


Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 474
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 395
Length adjustment: 31
Effective length of query: 371
Effective length of database: 364
Effective search space:   135044
Effective search space used:   135044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate CA265_RS18545 CA265_RS18545 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.17759.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17759.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.