Alignments for a candidate for ilvE in Pedobacter sp. GW460-11-11-14-LB5

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate CA265_RS22650 CA265_RS22650 branched chain amino acid aminotransferase

Query= BRENDA::A0A2Z4MEX9
         (357 letters)



>FitnessBrowser__Pedo557:CA265_RS22650
          Length = 354

 Score =  312 bits (800), Expect = 8e-90
 Identities = 148/349 (42%), Positives = 228/349 (65%), Gaps = 5/349 (1%)

Query: 5   LTITRTEQKKEKPAS-DKLGFGVHFTDHMFTMDYTEGKGWHDPQIVPYSPLTLDPAAMVF 63
           + IT+ +Q +       +L FG  FTDHMFT DY +G+ W + QI+PY P+ + PA    
Sbjct: 7   IKITKADQTRLTVTDFSQLPFGKVFTDHMFTADYEDGE-WKNLQILPYGPIPMSPAISAL 65

Query: 64  HYGQAVFEGLKAYRNQEGKVRLFRPDQNFKRMNRSLERMSMPLIDEEFMVEALKQLVAVD 123
           HYGQA+FEGLKAYR  +GK+ +FR D+NF+R N+S  RMSMP I EE  ++ L  L+ VD
Sbjct: 66  HYGQAIFEGLKAYRQPDGKISVFRADKNFERFNKSAARMSMPGIPEEIFMQGLAALINVD 125

Query: 124 KEWIPTESGQSLYIRPFVIATEPCFGVRASHTYKLVIVLSPVGAYYAGGMKPVKIYVENN 183
           ++W+P +   +LYIRP + A +P  GV+AS TYK  ++ +P G YY+  +K   + +E  
Sbjct: 126 EKWVPNQEDYALYIRPVMFAMDPYLGVKASDTYKFALLTTPTGPYYSSALK---VKIETE 182

Query: 184 YVRAVRGGTGNAKVAGNYAGSLKAQVEAKEKGYEQVLWLDGVENKYIEEVGSMNVFFKVK 243
           + RA  GG G AK AGNYA SL    +AK++GY+Q++W D V +++IEE G+ N+ F + 
Sbjct: 183 FTRADEGGVGFAKTAGNYARSLYPFEQAKKEGYDQLIWTDSVTHEFIEEAGTANLLFVIN 242

Query: 244 GEVWTPALNGSILEGITRDSTIQLLKDWGIPVVEKRISMEDLHTAYVNGELEEAFGTGTA 303
           G++ TP++  ++L+G+TRD+ I+L KD G+ V E+R+S++++     NG L EAF  GTA
Sbjct: 243 GKLVTPSVRSTVLDGVTRDTIIKLAKDAGVEVEERRVSVKEVIEGIENGSLTEAFAAGTA 302

Query: 304 AVISPVGDLNWNGHQMIINGEKTGELTTRLYDEMTGIQYGDREDKFGWS 352
           A ++ VG++ +NG    +    T  ++  +  ++  I+YG   D+FGW+
Sbjct: 303 ATVTHVGEMGYNGQIYKLTDPSTRHISNGIAKKLNDIRYGLAPDEFGWN 351


Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 393
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 354
Length adjustment: 29
Effective length of query: 328
Effective length of database: 325
Effective search space:   106600
Effective search space used:   106600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate CA265_RS22650 CA265_RS22650 (branched chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.32085.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32085.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.