Alignments for a candidate for leuA in Caulobacter crescentus NA1000

Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate CCNA_01610 CCNA_01610 2-isopropylmalate synthase

Query= BRENDA::Q9JZG1
         (517 letters)



>FitnessBrowser__Caulo:CCNA_01610
          Length = 524

 Score =  533 bits (1372), Expect = e-156
 Identities = 280/517 (54%), Positives = 366/517 (70%), Gaps = 5/517 (0%)

Query: 1   MTQTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAV 60
           +++ + V++FDTT+RDGEQSPGA+M+ EEK+ +A+ LE++GVD+IEAGF  AS GDFEAV
Sbjct: 9   ISKRDNVVVFDTTMRDGEQSPGASMSLEEKLELAKILEEMGVDVIEAGFPIASNGDFEAV 68

Query: 61  NAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQV 120
             IA+ IT+STVC L+RA   DI +  EAV  A + RIHTFI+TSP+HM+YKL+M+P  V
Sbjct: 69  RQIAELITESTVCGLARAAAGDIDRCAEAVRRAKRGRIHTFISTSPVHMKYKLQMEPDAV 128

Query: 121 IEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPY 180
           +EA  ++V  AR    DVE+S EDA R+E DFL     A I+AGATTIN+PDTVGYS P 
Sbjct: 129 LEAITRSVSHARNLVGDVEWSAEDATRTERDFLKRCVEAAIKAGATTINLPDTVGYSYPS 188

Query: 181 KTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGN 240
           +  E FR++I   P   K ++SAHCHNDLGLAVANS+AA++GGARQVE  +NG+GERAGN
Sbjct: 189 EYGELFRDVITSVPGADKAIFSAHCHNDLGLAVANSIAAIEGGARQVEVAINGIGERAGN 248

Query: 241 ASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESG 300
           A++EEIVMAL+VR D     T +D   I  +S+ VS ITG+PVQ NKAIVG NAF+HESG
Sbjct: 249 AALEEIVMALRVRGDHLPYGTSVDPVHITRASRYVSAITGFPVQFNKAIVGKNAFAHESG 308

Query: 301 IHQDGVLKHRETYEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAF 360
           IHQDG+LK+ ETYEIM  E VG     L +GK SGR+AF+ KL  LG EL  + ALN AF
Sbjct: 309 IHQDGMLKNAETYEIMKPEDVGQGATNLVMGKHSGRHAFREKLKALGYEL-GQNALNDAF 367

Query: 361 ARFKELADKKREIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGE 420
            RFKELADKK+ +FD+D+ ALV D + +  +E  +    ++   T +   A++   I G 
Sbjct: 368 GRFKELADKKKHVFDDDIVALVDDAL-ARGSEKIRVSRLRVVAGT-DGQSAELTLDIDGV 425

Query: 421 EKRASATGSGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNG 480
              A ATG GPVDA+F AI  +    AAL+++ V+AVT+GT++Q + SVRL    R+  G
Sbjct: 426 ASTAEATGDGPVDAVFNAIHKIVPHSAALRLFQVHAVTEGTDAQAQVSVRLEEDGRIATG 485

Query: 481 QGADTDVLVATAKAYLSALSKLEFSAAKPKAQGSGTI 517
             ADTD L A+AKAY++AL+ L   A K K++    I
Sbjct: 486 AAADTDTLTASAKAYVNALNNL--FARKEKSRPEAAI 520


Lambda     K      H
   0.313    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 659
Number of extensions: 34
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 524
Length adjustment: 35
Effective length of query: 482
Effective length of database: 489
Effective search space:   235698
Effective search space used:   235698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)

Align candidate CCNA_01610 CCNA_01610 (2-isopropylmalate synthase)
to HMM TIGR00973 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.27811.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27811.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.