Alignments for a candidate for trpD_2 in Caulobacter crescentus NA1000

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate CCNA_01975 CCNA_01975 anthranilate phosphoribosyltransferase

Query= SwissProt::P83827
         (329 letters)



>FitnessBrowser__Caulo:CCNA_01975
          Length = 341

 Score =  273 bits (699), Expect = 3e-78
 Identities = 160/321 (49%), Positives = 203/321 (63%), Gaps = 7/321 (2%)

Query: 10  GEVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVH 69
           G+ L++ +A     A + GE +P + A  + A+ LRGE   EIAA ARAMR AA PL  H
Sbjct: 15  GQTLDDSDAELFFAACLRGEPTPAQVAAAVTAIRLRGETVGEIAACARAMRRAAIPLE-H 73

Query: 70  RRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDL 129
              ++D+ GTGGDG   +N+ST    VAA GG+ VAKHGNRA +S++G+AD+L ALGV++
Sbjct: 74  PYDVIDVCGTGGDGLHTLNISTAVGFVAAGGGLKVAKHGNRAITSKSGTADVLTALGVNI 133

Query: 130 EAPPERVGEAIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYV 189
           +A  E+  +A++E G  FLFA+  H AM+HV+P+R +LG RT+FNLLGPLTNPAGA   V
Sbjct: 134 DATREQQRKALDEAGICFLFAQAHHGAMKHVSPIRQQLGFRTIFNLLGPLTNPAGAKRQV 193

Query: 190 LGVFSPEWLAPMAEALERLGA-RGLVVHGEGADEL-VLGENRVVEVGKGA---YALTPEE 244
           +GV +P ++ P+A+AL  LGA R   VHG G DEL   GE  V E   G    + +TPE 
Sbjct: 194 VGVSAPRFVEPIAKALGALGAERAWSVHGSGMDELTTTGETEVAEWRDGVVRLFKITPEA 253

Query: 245 VGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGV 304
           VGL RA L  L GG P  NAA   RL  G E GP  D V L A A F  A K  +L EGV
Sbjct: 254 VGLPRAALADLTGGDPAFNAAALTRLFDG-ETGPYRDIVLLNAAAAFLVADKVETLVEGV 312

Query: 305 ALAREVLASGEAYLLLERYVA 325
           ALA E + SG A   L   VA
Sbjct: 313 ALAAEAIDSGRAKAALAGLVA 333


Lambda     K      H
   0.317    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 283
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 341
Length adjustment: 28
Effective length of query: 301
Effective length of database: 313
Effective search space:    94213
Effective search space used:    94213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate CCNA_01975 CCNA_01975 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.18112.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18112.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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