Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate CCNA_02221 CCNA_02221 methionine synthase I metH
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Caulo:CCNA_02221
Length = 899
Score = 1084 bits (2803), Expect = 0.0
Identities = 566/885 (63%), Positives = 667/885 (75%), Gaps = 17/885 (1%)
Query: 355 LFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMV 414
+FVN+GERTNVTGSAKFK+LI E Y EAL VARQQVE GAQ+ID+NMDEG+LD++ AMV
Sbjct: 8 VFVNIGERTNVTGSAKFKKLIVEGNYPEALSVARQQVEAGAQVIDVNMDEGLLDSQQAMV 67
Query: 415 RFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLR 474
FLNL+A EPDIARVP+MIDSSKW+VIE GLKC+QGK IVNSIS+KEG + F+ A L
Sbjct: 68 TFLNLMAAEPDIARVPVMIDSSKWEVIEAGLKCVQGKAIVNSISLKEGEEKFLEQATLCL 127
Query: 475 RYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEE 534
RYGAAVVVMAFDE GQADT RK+EIC RAY L ++VGFPPEDIIFDPNIFAVATGIEE
Sbjct: 128 RYGAAVVVMAFDEVGQADTEKRKVEICTRAYNTLVDKVGFPPEDIIFDPNIFAVATGIEE 187
Query: 535 HNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDM 594
H+NYA DFI A IK+ LP+A +SGGVSNVSFSFRGN+PVR AIH+VFLY+AI GMDM
Sbjct: 188 HDNYAVDFIEATRRIKQMLPYARVSGGVSNVSFSFRGNEPVRRAIHSVFLYHAINAGMDM 247
Query: 595 GIVNAGQLAIYDDLPAELRDAVEDVILNR--RD---DGTERLLELAEKYRGSKTDDTANA 649
GIVNAG L +YDD+ LR+AVEDVILNR RD TERL+E+A +Y+G K
Sbjct: 248 GIVNAGDLPVYDDIDPALREAVEDVILNRPQRDPVMTNTERLVEMAPRYKGEKGQQ--QV 305
Query: 650 QQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFG 709
EWR VN+RL ++LV GITEFIEQDTEEAR A RP+ VIEGPLMDGMNVVGDLFG
Sbjct: 306 ANLEWRKGTVNERLTHALVHGITEFIEQDTEEARLAAERPLHVIEGPLMDGMNVVGDLFG 365
Query: 710 EGKMFLPQVVKSARVMKQAVAYLEPFIEASKE--QGKTNGKMVIATVKGDVHDIGKNIVG 767
GKMFLPQVVKSARVMKQAVA+L PF+EA KE + K GK+++ATVKGDVHDIGKNIVG
Sbjct: 366 AGKMFLPQVVKSARVMKQAVAWLMPFMEAEKEGQERKAAGKVLMATVKGDVHDIGKNIVG 425
Query: 768 VVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFT 827
VVLQCNNYE+VDLGVMVPA++IL AK+ D+IGLSGLITPSLDEMV VA EMERQGF
Sbjct: 426 VVLQCNNYEVVDLGVMVPADRILDEAKKHKVDMIGLSGLITPSLDEMVFVAAEMERQGFD 485
Query: 828 IPLLIGGATTSKAHTAVKIEQNY-SGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKE 886
IPLLIGGATTS+ HTAVKIE Y GPT YV +ASR VGVV+ LLS+ +RD +A TR E
Sbjct: 486 IPLLIGGATTSRTHTAVKIEPAYRRGPTTYVVDASRAVGVVSGLLSEGERDRIIAETRAE 545
Query: 887 YETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVEASIETLRNYID 946
Y VR Q+ R + +++ AR FA DW+ Y PP +G + E S+ L +ID
Sbjct: 546 YVKVREQYARGQTTKARASIQEARKRAFAIDWKGYAPPKPAFIGTRVFEPSLAELVPFID 605
Query: 947 WTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANR 1006
W+PFF +W L G++P+ILED+VVG A L++DA MLDK+ EK +GV+G +PA
Sbjct: 606 WSPFFASWELIGRFPQILEDDVVGQAATDLYRDARAMLDKVVEEKWFGAKGVIGFWPAQA 665
Query: 1007 VGDDIEIYRDETRTHVINVSHHLRQQTEK------TGFANYCLADFVAPKLSGKADYIGA 1060
GDDI +Y DETR + H LRQQ +K AN L+DFVAP G ADY+G
Sbjct: 666 QGDDIVLYTDETRVAEFSRLHTLRQQMDKGADKSGEAKANVALSDFVAPIGQG-ADYVGG 724
Query: 1061 FAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENL 1120
FAVT G ED + F+A DDYN IM ALADRLAEAFAE+LH + R WGYA +E+
Sbjct: 725 FAVTAGHGEDEIVAKFKAAGDDYNAIMASALADRLAEAFAEWLHYKARVELWGYAADEDA 784
Query: 1121 SNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGW 1180
E LI E YQGIRPAPGYPA P+HTEK T+++LL+ E TG++LTES+AM PGA+VSG
Sbjct: 785 DVERLIAEKYQGIRPAPGYPAQPDHTEKGTLFKLLDAEAATGLQLTESYAMTPGAAVSGL 844
Query: 1181 YFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYD 1225
+FSH + Y+ V +I DQVEDYARRKG + ERWL+P L YD
Sbjct: 845 FFSHRQAHYFGVGKIDADQVEDYARRKGWDMETAERWLSPILNYD 889
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2687
Number of extensions: 101
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 899
Length adjustment: 45
Effective length of query: 1182
Effective length of database: 854
Effective search space: 1009428
Effective search space used: 1009428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate CCNA_02222 CCNA_02222 5-methyltetrahydrofolate--homocysteine methyltransferase homocysteine-binding subunit
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Caulo:CCNA_02222
Length = 358
Score = 375 bits (963), Expect = e-108
Identities = 182/350 (52%), Positives = 243/350 (69%), Gaps = 1/350 (0%)
Query: 2 SSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKP 61
+++V L+A ERIL+LDG G M Q L EAD+R ERFA + +KGNND+L L++P
Sbjct: 8 ANRVAALKAAAKERILILDGSWGVMFQKKGLTEADYRAERFAAYNGQMKGNNDILCLTRP 67
Query: 62 EVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSA-EINFAAAKLARACADEWTA 120
+++A +H+AYF AGADI ETNTF+ TTIA ADY + +IN AK+ R+ AD W A
Sbjct: 68 DLVAELHDAYFSAGADISETNTFSGTTIAQADYHLGEQDVWDINLEGAKIGRSVADRWNA 127
Query: 121 RTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILI 180
+ P++P+++AG +GP N S+S DVNDP R +TFD + AYR+ AL +GG DL LI
Sbjct: 128 QNPDRPKFIAGSMGPLNVMLSMSSDVNDPGARKVTFDQVYEAYRQQVDALYQGGVDLFLI 187
Query: 181 ETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEA 240
ET+ DTLN KAA+ A+ + ELPI ISGTITD SGRTLSGQT EAF+NS++HA+
Sbjct: 188 ETITDTLNCKAAIKAILDWRDEGHEELPIWISGTITDRSGRTLSGQTAEAFWNSVKHAKP 247
Query: 241 LTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQ 300
G NCALG D +R ++ E++RIA+ V A+PNAGLPNA G+YD + + EWA+
Sbjct: 248 FAVGFNCALGADLMRPHIAEMARIADTLVAAYPNAGLPNAMGQYDEEPHETGHALHEWAK 307
Query: 301 AGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNI 350
G +NI+GGCCGTTP HI ++ V G+ PR++PE P A RL+GLEP +
Sbjct: 308 DGLVNILGGCCGTTPDHIRHVADEVRGVTPRQIPERPKAMRLAGLEPFEL 357
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1056
Number of extensions: 36
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 358
Length adjustment: 38
Effective length of query: 1189
Effective length of database: 320
Effective search space: 380480
Effective search space used: 380480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate CCNA_02221 CCNA_02221 (methionine synthase I metH)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.6735.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6735.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.