Alignments for a candidate for serC in Caulobacter crescentus NA1000

Align phosphoserine aminotransferase monomer (EC 2.6.1.52; EC 2.6.1.1) (characterized)
to candidate CCNA_03323 CCNA_03323 phosphoserine aminotransferase

Query= metacyc::MONOMER-15918
         (370 letters)



>FitnessBrowser__Caulo:CCNA_03323
          Length = 396

 Score =  461 bits (1187), Expect = e-134
 Identities = 230/383 (60%), Positives = 275/383 (71%), Gaps = 15/383 (3%)

Query: 2   KPTRVPKNPCFSSGPCAKHPGYSVEELKDTPFGRSHRSKPGKEKLAEAIKRTRDMLGLPD 61
           KP   P  P FSSGPCAK PG++ E L++   GRSHRSK GK +L  AI +TR++L +P 
Sbjct: 7   KPAIRPARPEFSSGPCAKRPGWTPENLRNAVLGRSHRSKLGKARLKAAIDQTREVLEVPA 66

Query: 62  DYFVGIVPASDTGAFEMCLWSMLGCRGVDVLVWESFSKGWATDITKQLKLKDTRVFEAEY 121
           D+ +GIV  SDTGA EM +WSMLG R V +L +ESF K W TD+TKQLKL D  V  A Y
Sbjct: 67  DFLIGIVAGSDTGAVEMAMWSMLGARPVQLLAFESFGKDWVTDVTKQLKLPDVEVLSAPY 126

Query: 122 GKLPDLKKVDFKNDVVFVWNGTTSGVKVPNADWIPDDREGVTLCDATSAIFAMDIPYHKL 181
           G+LPD  KVD   D+VF WNGTTSGV+VPNAD+I  DREG+T+CDATSA FA D+ + KL
Sbjct: 127 GQLPDTSKVDPAKDLVFTWNGTTSGVRVPNADFISADREGITICDATSAAFAQDLDWTKL 186

Query: 182 DVITFSWQKVLGGEGAHGMLILSPRAVQRLESYTPAWPLPKIFRLTK-----GGKLNKDI 236
           DV+TFSWQK LGGEGAHG+LILSPRAV RLESYTPAWP+PK+FR+TK     G K++ DI
Sbjct: 187 DVVTFSWQKALGGEGAHGVLILSPRAVARLESYTPAWPMPKLFRMTKANKDGGNKVSLDI 246

Query: 237 FAGSTINTPSMLANEDWLATLKWAESVGGLKQLIRRTNENLAVFEAFVAKNNWIHFLAET 296
           F G+TINTPSML  ED L  LKWA S+GGL+ +  R ++NL V   +VAK  W+ FLA T
Sbjct: 247 FEGATINTPSMLCVEDALDALKWASSIGGLQAMQARADQNLKVLADWVAKTPWVDFLAAT 306

Query: 297 KEIRSSTSVCFKV----------DLSDEKLKELIKTLEKEKVAYDIGSYRDAPSGLRIWC 346
            EIRS+TSVC KV          D   +  K+L   LEKE  A DIG YRDAP+GLRIWC
Sbjct: 307 PEIRSNTSVCLKVVDPAICALPEDAQADFAKKLASLLEKEGAALDIGGYRDAPAGLRIWC 366

Query: 347 GATVEKEDLECLCEWIEWAYNLV 369
           GATVE  DLE L  W++WA+  V
Sbjct: 367 GATVEASDLEALTPWLDWAFATV 389


Lambda     K      H
   0.319    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 494
Number of extensions: 17
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 396
Length adjustment: 30
Effective length of query: 340
Effective length of database: 366
Effective search space:   124440
Effective search space used:   124440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate CCNA_03323 CCNA_03323 (phosphoserine aminotransferase)
to HMM TIGR01365 (phosphoserine aminotransferase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.14234.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14234.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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