Alignments for a candidate for dapB in Caulobacter crescentus NA1000

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate CCNA_03664 CCNA_03664 dihydrodipicolinate reductase

Query= BRENDA::Q2YJN7
         (268 letters)



>FitnessBrowser__Caulo:CCNA_03664
          Length = 257

 Score =  232 bits (591), Expect = 7e-66
 Identities = 135/264 (51%), Positives = 167/264 (63%), Gaps = 17/264 (6%)

Query: 3   LVVVGAGGRMGQTLIRTIQSIEGAKLVGAIERSGSPFLGKDAGEVTGIGTLGVAITDDPL 62
           + + GA GRMG+ + + ++    A +    ER G      DAGE       G+   +  L
Sbjct: 7   IAIAGANGRMGRAVAQALEGRSDAVVAARFERPG------DAGE-------GLVARETAL 53

Query: 63  PVFAKAHGVLDFTSPAASVEFAG-LAAQARIVHVIGTTGCSAEDDEKIRAAARHATIVKS 121
              A A  V+DFT P ASV  A   AA      VIG+TG S E  ++I AAA    IV+S
Sbjct: 54  ---AAAEAVIDFTLPEASVALAEEAAANGGPALVIGSTGFSDEQLDRIDAAATKIVIVRS 110

Query: 122 GNMSLGVNLLSVLVQKAAEALGPEDFDIEILEMHHRHKVDAPSGTALLLGEAAARGRDIA 181
           GN SLGVN+L  LV++AA AL  +D+DIE+ E HH+ K+DAPSGTAL+LGEAAA GR I 
Sbjct: 111 GNYSLGVNMLMGLVRQAAAALPAQDWDIEVFEAHHKRKIDAPSGTALMLGEAAAEGRGIN 170

Query: 182 LADNSVRVRDGYTGPRETGAIGFATLRGGSVIGDHSVILAGTGERVVLSHHAEDRSIFAR 241
           LA  S R RDG TGPR+ G IGF+ +RGG +IG+HSVI AG  E + LSH A DR +FAR
Sbjct: 171 LAKVSDRGRDGVTGPRKDGDIGFSVVRGGGIIGEHSVIFAGESESLTLSHSAIDRGLFAR 230

Query: 242 GAIKAALWAHGKKPGLYSMLDVLG 265
           GAI AA+W  GK PGLY M DVLG
Sbjct: 231 GAIAAAVWVKGKPPGLYDMQDVLG 254


Lambda     K      H
   0.318    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 230
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 257
Length adjustment: 25
Effective length of query: 243
Effective length of database: 232
Effective search space:    56376
Effective search space used:    56376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate CCNA_03664 CCNA_03664 (dihydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.15731.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15731.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.