Alignments for a candidate for hisF in Caulobacter crescentus NA1000

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate CCNA_03853 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__Caulo:CCNA_03853
          Length = 260

 Score =  327 bits (839), Expect = 1e-94
 Identities = 164/251 (65%), Positives = 200/251 (79%), Gaps = 2/251 (0%)

Query: 3   LCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGRGT 62
           L TRIIPCLDV DGRVVKGVNF  L DAGDPVEQA+ YDAAGADEL FLDI+AS EGRG 
Sbjct: 2   LKTRIIPCLDVKDGRVVKGVNFVSLRDAGDPVEQARAYDAAGADELMFLDITASSEGRGL 61

Query: 63  MLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADRFG 122
           +LDV++RTAEVCFMP++VGGGVRQV D R LLLAGADKV+VN+AAV  P+L+A  AD FG
Sbjct: 62  ILDVISRTAEVCFMPVSVGGGVRQVSDMRRLLLAGADKVSVNTAAVENPDLIAGGADAFG 121

Query: 123 AQCVVAAID--ARRNGDHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGTR 180
           +QCVV AID  AR +G  W V+T+GGR+ TGI+ ++ A  +   GAGEILLTSMD+DG +
Sbjct: 122 SQCVVVAIDAKAREDGSGWNVWTYGGRKDTGIDVVEWAAKVVERGAGEILLTSMDRDGAK 181

Query: 181 DGYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEAH 240
            GYD+ L + V  +V VPVIASGG G  +H++E   +GHA+A+LAASIFHFG+ S+ EA 
Sbjct: 182 IGYDIPLLQAVTGAVNVPVIASGGAGKTEHLIEAAREGHAAAVLAASIFHFGEISIGEAK 241

Query: 241 EALAKAGLTVR 251
           +A+A AG+ VR
Sbjct: 242 QAMADAGIPVR 252


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 278
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 260
Length adjustment: 24
Effective length of query: 231
Effective length of database: 236
Effective search space:    54516
Effective search space used:    54516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate CCNA_03853 CCNA_03853 (imidazole glycerol phosphate synthase, cyclase subunit)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.24004.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24004.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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