Alignments for a candidate for hisD in Dechlorosoma suillum PS

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate Dsui_1411 Dsui_1411 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>FitnessBrowser__PS:Dsui_1411
          Length = 435

 Score =  420 bits (1080), Expect = e-122
 Identities = 217/429 (50%), Positives = 294/429 (68%), Gaps = 1/429 (0%)

Query: 2   VTTLRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDL 61
           +  L   D DF+Q+    L+ +    E++++ V  I+  V+  GD+A+++Y+ RFDR+ +
Sbjct: 6   IKRLNSADADFQQRLDELLAFEGAQDENIEKTVVGILADVKARGDAAVVEYTNRFDRLSV 65

Query: 62  E-KTGIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSR 120
                + + +AE+ AA D  PA    AL+ A  RI  +H RQL     YT+A G  LG  
Sbjct: 66  AGMAALELPKAELQAALDGLPAERRAALEAAAQRIRTYHERQLGAGFTYTEADGTMLGQM 125

Query: 121 WTAIEAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAG 180
            T ++ VGLYVPGG A+YPSSVLMNA+PAKVAGV  ++MVVP P G  N LVL AA LAG
Sbjct: 126 VTPLDRVGLYVPGGKAAYPSSVLMNALPAKVAGVKELIMVVPTPGGEHNALVLAAACLAG 185

Query: 181 VSEIYRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVL 240
           V  ++ +GGAQA+AALAYGTET+  V KIVGPGNAYVA AKR VFG VGIDM+AGPSE+L
Sbjct: 186 VDRVFTIGGAQAVAALAYGTETVPQVDKIVGPGNAYVACAKRRVFGIVGIDMVAGPSEIL 245

Query: 241 IVADKDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASA 300
           ++AD   +PDW+A DL +QAEHD  AQSIL+  D A+   V+ ++++ L T+ R +    
Sbjct: 246 VLADGSTDPDWVAMDLFSQAEHDELAQSILICPDAAYIEKVQASIDKLLPTMPRRDVIRT 305

Query: 301 SWRDFGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIG 360
           S  + GA+ILV+D E+A+ +ANR+A EHLE+++A+ +A+V +I +AG+IFIG YT E +G
Sbjct: 306 SLENRGALILVRDLEEAVAMANRVAPEHLELSLAEPDAWVEKIHHAGAIFIGPYTSESLG 365

Query: 361 DYVGGCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAH 420
           DY  G NHVLPT+ SARFSS L V D+ KRTSL+++     + LG  A  +A  EGL AH
Sbjct: 366 DYCAGPNHVLPTSGSARFSSPLGVYDFQKRTSLIRVSRAGAQTLGRIAATLADGEGLPAH 425

Query: 421 AQSVAIRLN 429
           AQS   RL+
Sbjct: 426 AQSARYRLD 434


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 499
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 435
Length adjustment: 32
Effective length of query: 398
Effective length of database: 403
Effective search space:   160394
Effective search space used:   160394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate Dsui_1411 Dsui_1411 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.10097.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10097.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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