Alignments for a candidate for hisF in Dechlorosoma suillum PS

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate Dsui_1418 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__PS:Dsui_1418
          Length = 253

 Score =  291 bits (744), Expect = 1e-83
 Identities = 146/252 (57%), Positives = 190/252 (75%), Gaps = 1/252 (0%)

Query: 1   MTLCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGR 60
           M L  RIIPCLDV  GRVVKG NF +L DAGDPVE A+ YD  GADE+ FLDI+AS + R
Sbjct: 1   MALAKRIIPCLDVTAGRVVKGTNFVELRDAGDPVEIARRYDEQGADEVTFLDITASSDQR 60

Query: 61  GTMLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADR 120
             +L ++   A   F+PLTVGGGVR+VED R LL AGADKV++N+AAV  P+LV++ + +
Sbjct: 61  DIILHIIEACASQVFIPLTVGGGVRKVEDVRRLLNAGADKVSMNTAAVQNPDLVSDASAK 120

Query: 121 FGAQCVVAAIDARRNG-DHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMDKDGT 179
            G+QC+V AIDA++     W V+THGGR  TGI+ +  A ++   GAGEILLTSMD+DGT
Sbjct: 121 VGSQCIVVAIDAKQTAPGQWCVFTHGGRNNTGIDVVTWAKDVATRGAGEILLTSMDRDGT 180

Query: 180 RDGYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYSLAEA 239
           ++G+DL LTR V+D+V +PVIASGGVGNL H+ +GVT+G A A+LAASIFHFG+Y++ +A
Sbjct: 181 KNGFDLALTRAVSDAVAIPVIASGGVGNLQHLADGVTQGGADAVLAASIFHFGEYTVRQA 240

Query: 240 HEALAKAGLTVR 251
            E +   G+ VR
Sbjct: 241 KEYMRDRGIEVR 252


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 242
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 253
Length adjustment: 24
Effective length of query: 231
Effective length of database: 229
Effective search space:    52899
Effective search space used:    52899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate Dsui_1418 Dsui_1418 (imidazoleglycerol phosphate synthase, cyclase subunit)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.1430.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1430.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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