Alignments for a candidate for cmutase in Dechlorosoma suillum PS

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate Dsui_1940 Dsui_1940 chorismate mutase, clade 2

Query= SwissProt::P27603
         (365 letters)



>FitnessBrowser__PS:Dsui_1940
          Length = 374

 Score =  386 bits (991), Expect = e-112
 Identities = 192/360 (53%), Positives = 254/360 (70%), Gaps = 6/360 (1%)

Query: 7   LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
           L  +R+ ID++D ++LDL++ RARCAQ+V  +K       +    YRPEREA VL+ I +
Sbjct: 18  LSVVRMDIDAIDAQLLDLLNRRARCAQQVGEIKARH---GDAGFIYRPEREAQVLRRIQD 74

Query: 67  LNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMAA 126
           +N+GPL +E +   FRE+MS+CL+LEQPL +A+LGP GTFS++A+ KHFGH+    P A+
Sbjct: 75  MNQGPLSSESVTWFFREVMSACLSLEQPLGIAFLGPLGTFSESASTKHFGHAARLLPQAS 134

Query: 127 IDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETT 186
           ID+VFREV AG  N+GV PVENSTEGAV  TLD  L   + ICGEV LRIH HLL  +  
Sbjct: 135 IDDVFREVEAGHANYGVAPVENSTEGAVGRTLDLLLGTSLKICGEVVLRIHQHLLT-KAP 193

Query: 187 KTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAAQ 246
             DR+T++YSHAQSLAQC +WL+ H PNV R++V SNA AA+    E  +AAIAG+ AA 
Sbjct: 194 SLDRVTKVYSHAQSLAQCHEWLNRHLPNVPRISVGSNAQAAQMAAQEEGAAAIAGEAAAD 253

Query: 247 LYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPT--GDDKTSIIVSMRNKPGALHELLMPFH 304
            Y L +LAE IED P N+TRF+++G  +  P+  G DKTS+I+S+ N  GALH LL+PF 
Sbjct: 254 RYDLPRLAESIEDEPNNTTRFVVLGRHDAGPSTAGKDKTSLIMSIPNNTGALHTLLVPFA 313

Query: 305 SNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKAV 364
             G+ LTR+E+RP+R   W YVFF+D  GH  +P +K  L+++   A  LKVLGSYP AV
Sbjct: 314 DAGVSLTRLESRPARHTLWEYVFFVDVDGHRDEPRVKAALDELARRAAYLKVLGSYPVAV 373


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 374
Length adjustment: 30
Effective length of query: 335
Effective length of database: 344
Effective search space:   115240
Effective search space used:   115240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Dsui_1940 Dsui_1940 (chorismate mutase, clade 2)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.15673.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.