Alignments for a candidate for leuB in Dechlorosoma suillum PS

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate Dsui_3198 Dsui_3198 3-isopropylmalate dehydrogenase

Query= SwissProt::Q56268
         (358 letters)



>FitnessBrowser__PS:Dsui_3198
          Length = 354

 Score =  432 bits (1111), Expect = e-126
 Identities = 227/357 (63%), Positives = 278/357 (77%), Gaps = 9/357 (2%)

Query: 3   KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLA 62
           KI +  GDGIGPEI+A A +VL+A++    LG      L+GG A+DA+ +P P AS +LA
Sbjct: 2   KICVLPGDGIGPEIMAEAVRVLEALN----LGFEMETALLGGCAVDATGNPYPEASQKLA 57

Query: 63  MAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPE 122
            AADAV+LGAVGGP+WD  P  +RPE+GLL +RK L+L+ANLRPA ++P+L +AS L+PE
Sbjct: 58  QAADAVLLGAVGGPQWDTLPREQRPERGLLGIRKQLNLFANLRPAILYPELANASTLKPE 117

Query: 123 LVRDVDILVVRELTGDIYFGQPRGLEV--IDGKRR--GFNTMVYDEDEIRRIAHVAFRAA 178
           +V  +DIL+VRELTGDIYFGQPRG+E   IDG+++  GFNTM Y E EIRRI  VAF AA
Sbjct: 118 VVAGLDILIVRELTGDIYFGQPRGIEEREIDGQKQRFGFNTMHYSESEIRRILRVAFEAA 177

Query: 179 QGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238
           + R K+LCSVDK NVLETT+LWR++  E+A +YPDV LSHM VDNAAMQL+R P QFDV+
Sbjct: 178 RKRNKKLCSVDKMNVLETTQLWRDIANELAPEYPDVELSHMLVDNAAMQLVRNPKQFDVM 237

Query: 239 LTGNMFGDILSDEASQLTGSIGMLPSASL-GEGRAMYEPIHGSAPDIAGQDKANPLATIL 297
           +TGNMFGDILSDEAS LTGSIGMLPSASL    + +YEP HGSAPDIAG+  ANPLATIL
Sbjct: 238 VTGNMFGDILSDEASMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGVANPLATIL 297

Query: 298 SVAMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354
           S AMMLR++ N E  A +VE AV++VL QG RT DI  PGT  +GT+ MG AV+ AL
Sbjct: 298 SAAMMLRYTFNMEEAAVKVENAVKKVLAQGYRTGDIYEPGTTKVGTRQMGDAVLAAL 354


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 407
Number of extensions: 14
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 354
Length adjustment: 29
Effective length of query: 329
Effective length of database: 325
Effective search space:   106925
Effective search space used:   106925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Dsui_3198 Dsui_3198 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.25100.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25100.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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