Alignments for a candidate for cysK in Dechlorosoma suillum PS

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate Dsui_3208 Dsui_3208 cysteine synthase A

Query= BRENDA::P9WP55
         (310 letters)



>FitnessBrowser__PS:Dsui_3208
          Length = 310

 Score =  436 bits (1121), Expect = e-127
 Identities = 214/305 (70%), Positives = 251/305 (82%)

Query: 1   MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 60
           M IA+D+TQL+G+TPLV+L RV  G    +  KLE+FNPA+SVKDRI VAM+ AA+ AG 
Sbjct: 1   MKIAKDVTQLVGKTPLVQLNRVAAGIEGTVALKLEYFNPAHSVKDRIAVAMIDAAQAAGK 60

Query: 61  IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 120
           IKPDTI+LEPTSGNTGI LAMVCAARG +    MPETMS ER++LL+AYGAELILTPG +
Sbjct: 61  IKPDTIVLEPTSGNTGIGLAMVCAARGIKAAFVMPETMSRERKLLLKAYGAELILTPGPE 120

Query: 121 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 180
           GM GAI KA+ELA++D RYF+PQQFENPANP +HR TTAEE+W DTDG+VDI VAGVGTG
Sbjct: 121 GMGGAIKKAQELAESDSRYFIPQQFENPANPEVHRNTTAEEIWADTDGQVDIFVAGVGTG 180

Query: 181 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 240
           GT+TGV +V+K RKP  +  AVEP ASPVLSGG KGPHPIQGIGAGFVP VL+  + D +
Sbjct: 181 GTVTGVGEVLKARKPGVQVFAVEPDASPVLSGGAKGPHPIQGIGAGFVPAVLNTQVYDGV 240

Query: 241 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYL 300
           + V N+DA   ARRLA EEGLLVGISSGAA  AAL++AR+PEN GKL VVV+P FGERYL
Sbjct: 241 VRVKNDDAFATARRLATEEGLLVGISSGAAVWAALEIARKPENKGKLTVVVIPSFGERYL 300

Query: 301 STPLF 305
           ST L+
Sbjct: 301 STALY 305


Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 348
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 310
Length adjustment: 27
Effective length of query: 283
Effective length of database: 283
Effective search space:    80089
Effective search space used:    80089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate Dsui_3208 Dsui_3208 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.19484.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19484.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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