Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate Dsui_3527 Dsui_3527 ketol-acid reductoisomerase
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__PS:Dsui_3527 Length = 338 Score = 536 bits (1381), Expect = e-157 Identities = 261/338 (77%), Positives = 295/338 (87%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAANAG 60 MKV+YDKDADLSLIKGK VTI+GYGSQGHAHA NLKDSG VTVGLRK GASW KA AG Sbjct: 1 MKVYYDKDADLSLIKGKKVTIVGYGSQGHAHAQNLKDSGCKVTVGLRKGGASWAKAEKAG 60 Query: 61 LQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPRA 120 L+V+E+A+AVKGADVVMILLPDE I VY +V N+K+GAALAFAHGFNVHY V+PR Sbjct: 61 LKVEEIAKAVKGADVVMILLPDENIPAVYYADVEPNLKKGAALAFAHGFNVHYNQVVPRE 120 Query: 121 DLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIE 180 D+DVIM+APK PGHTVR+ Y +GGGVP LIAV+Q+K+G A+DIALSYA ANGG + G+IE Sbjct: 121 DVDVIMVAPKGPGHTVRSEYLKGGGVPSLIAVYQDKTGKAKDIALSYAAANGGTKGGVIE 180 Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240 TNFREETETDLFGEQAVLCGG VEL+K GFETLVEAGYAPEMAYFECLHELKLIVDL+YE Sbjct: 181 TNFREETETDLFGEQAVLCGGAVELVKMGFETLVEAGYAPEMAYFECLHELKLIVDLMYE 240 Query: 241 GGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAPT 300 GGIANMNYSISNNAEYGEYVTGP V+ EE++ AM+ L IQTGEYAK F+LE K G P+ Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPEVINEESRYAMRNALKRIQTGEYAKMFILEGKTGYPS 300 Query: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 + +RRRLTA+H IE+VG+KLR MMPWI KNK+VDQSKN Sbjct: 301 MTARRRLTADHPIEQVGSKLRDMMPWIKKNKLVDQSKN 338 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 508 Number of extensions: 17 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 338 Length adjustment: 28 Effective length of query: 310 Effective length of database: 310 Effective search space: 96100 Effective search space used: 96100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Dsui_3527 Dsui_3527 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.21457.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21457.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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