Alignments for a candidate for galK in Echinicola vietnamensis KMM 6221, DSM 17526

Align Galactokinase (EC 2.7.1.6) (characterized)
to candidate Echvi_0696 Echvi_0696 galactokinase

Query= reanno::Pedo557:CA265_RS06125
         (383 letters)



>FitnessBrowser__Cola:Echvi_0696
          Length = 383

 Score =  381 bits (979), Expect = e-110
 Identities = 187/379 (49%), Positives = 259/379 (68%)

Query: 1   MNAQHLKNTFKKLFNAEPILVRSPGRINIIGEHTDYNGGFVMPAAIDKAIYVAISKRGDD 60
           MN   +++ F++LF+ +PI+V+SPGRIN+IGEHTDYN GFV+PAAI+K I +A+ K   D
Sbjct: 1   MNPGIIRSAFEELFDKKPIVVKSPGRINLIGEHTDYNEGFVLPAAINKEIVIAVQKNDSD 60

Query: 61  EIHLFSESYQQFDISSINSLKKSENSWANYILGIADQLKERGYQLGGFNFYIDGDVPLGA 120
           E  LFS+ +Q+     ++  ++ E  W NY++G+  QL++ GY + GF+    GDVP+GA
Sbjct: 61  ECRLFSQDFQESLTFDLHDFERMEGGWGNYVMGVVAQLQQAGYPIEGFDLVFGGDVPVGA 120

Query: 121 GLSSSAAVECATGFALDQLFSLSVSRMDIALIAQKAEQTFAGVNCGIMDQFASVFGKKDQ 180
           GLSSSAAVE     AL +LF L + R+D+   AQKAE  FAGV CGIMDQFAS+ GK + 
Sbjct: 121 GLSSSAAVENGVCLALSELFGLGLERLDMLKFAQKAEHEFAGVQCGIMDQFASMMGKDNH 180

Query: 181 AIMLDCRSMKHIYIPLKLDGYKLLLLNTNVKHALADSAYNKRRSQCEQGVAWVKAHYPNV 240
           AI LDCRS+++ Y P+ L  Y+++L +T VKH+LADSAYN RR +C+ GVA V+     V
Sbjct: 181 AIRLDCRSLEYSYFPIDLGDYQIILCDTQVKHSLADSAYNDRRRECQAGVAAVQQTNQTV 240

Query: 241 STLRDVDLTMLETYVKPMDLEVYNKCRFVVEEIGRLLTAAEQLENGNLQALGKLMFETHE 300
            +LRDV L +LE     +   V+ +C+FV+EE  RLL   E LE G+++  G+ M+ +H+
Sbjct: 241 KSLRDVTLELLEETKSKISEVVFRRCKFVIEENARLLKGCELLEKGDIKGFGQQMYGSHD 300

Query: 301 GLSKDYEVSCKELDFLVEAVKPLDYVLGARMMGGGFGGCTINIVKEEKIADLVEELSSKY 360
           GLS  YEVSCKELDFL +  K  + V GARMMGGGFGGCTIN+V++       +E+++ Y
Sbjct: 301 GLSGLYEVSCKELDFLADFAKSRETVAGARMMGGGFGGCTINLVEKGAKETFEKEVAAAY 360

Query: 361 LLQFGLKLDSYTVQTDNGT 379
              FG  L  Y V+  +GT
Sbjct: 361 EKAFGKSLQIYEVEVTDGT 379


Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 392
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 383
Length adjustment: 30
Effective length of query: 353
Effective length of database: 353
Effective search space:   124609
Effective search space used:   124609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_0696 Echvi_0696 (galactokinase)
to HMM TIGR00131 (galK: galactokinase (EC 2.7.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.17331.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17331.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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