Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate Echvi_0768 Echvi_0768 carbamoyl-phosphate synthase, large subunit
Query= BRENDA::P00968
(1073 letters)
>FitnessBrowser__Cola:Echvi_0768
Length = 939
Score = 920 bits (2378), Expect = 0.0
Identities = 487/926 (52%), Positives = 640/926 (69%), Gaps = 19/926 (2%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPK IK +LI+G+GPIVIGQACEFDYSG+QA ++LREEG V L+NSNPATIMTDP
Sbjct: 1 MPKDNSIKHVLIIGSGPIVIGQACEFDYSGSQAARSLREEGITVTLINSNPATIMTDPVT 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPD--AVLPTMGGQTALNCALELERQGVLEEFGVTMIGA 118
AD Y+ P+ + + KI+E E PD VLPTMGGQTALN A+E ++ G+ + F V MIG
Sbjct: 61 ADNVYLLPLEKKSLVKILE-EHPDIDCVLPTMGGQTALNLAIEADKAGIWDRFKVRMIGV 119
Query: 119 TADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSG 178
DAI+ AE+R +F ++++ + A + + +A ++GFP +IRPS+T+GG+G
Sbjct: 120 DIDAIETAENREKFKALLEELNVGVCIGKTATSFLQGKEIAQEIGFPLVIRPSYTLGGTG 179
Query: 179 GGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFD 238
GG EEFE GL SPT E+LI++S++GWKEYE+EV+RD N +++CSIENFD
Sbjct: 180 GGFVEKEEEFENALMSGLKASPTHEVLIEQSILGWKEYELEVLRDSLGNMVVICSIENFD 239
Query: 239 AMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVI 298
MG+HTGDSITVAPA TL D YQ MRN ++ ++ IG GG NVQF+V+P N +I I
Sbjct: 240 PMGVHTGDSITVAPAMTLPDTVYQEMRNLAIKMMNGIGNFAGGCNVQFSVSPDNQTIIGI 299
Query: 299 EMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTK 358
E+NPRVSRSSALASKATG+PIAKVAAKLA+GY LDEL N ITG T A FEP+IDYV+ K
Sbjct: 300 EINPRVSRSSALASKATGYPIAKVAAKLAIGYNLDELKNSITGS-TSAFFEPAIDYVIVK 358
Query: 359 IPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGF--DPKVSLD 416
IPR+NF+KF G++ RL MK+VGEVM IG QE+LQKA + LE+ G D K L
Sbjct: 359 IPRWNFDKFKGSDRRLGLSMKAVGEVMGIGGNFQEALQKACQSLEIKRNGLGADGK-ELK 417
Query: 417 DPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKV 476
+ E +I L+ +R+++I DAF+ G+S + +LT ID+WFL QIEELV L+ +
Sbjct: 418 NQE---QILYSLEHPSWNRLFHIYDAFKLGISFRTIHDLTKIDKWFLKQIEELVHLDITL 474
Query: 477 AEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEI-RKLRDQYDLHPVYKRVDTCAAE 535
+ + + D + K KG+AD ++A L G E+E+ K RD+ + VYK VDTCAAE
Sbjct: 475 DKYTLDTIPKDLMMLAKHKGYADRQIAHLLGCLESEVFNKRRDEMGIKRVYKLVDTCAAE 534
Query: 536 FATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE 595
F T Y YS++ EE E+ S DR+K++VLG GPNR+GQGIEFDY CVH LA +E GYE
Sbjct: 535 FEAQTPYYYSSFGEENESQVS-DRKKVIVLGSGPNRVGQGIEFDYSCVHGVLAAKECGYE 593
Query: 596 TIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALE 655
TIM+NCNPETVSTD+D +D+LYFEPV E + EI+ EKP+GVIVQ GGQT LKLA LE
Sbjct: 594 TIMINCNPETVSTDFDIADKLYFEPVFWEHIYEIILHEKPEGVIVQLGGQTALKLAEKLE 653
Query: 656 AAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVR 715
G+ ++GTS +A+D AEDR F ++ + P T+ + + A+E K IG+PL+VR
Sbjct: 654 KYGIKILGTSFEALDLAEDRGEFSSLLKENDVPYPEFGTIHSTDEALELCKTIGFPLLVR 713
Query: 716 PSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLI 775
PSYVLGG+ M+IV +E +L ++ + D +LLDHFL+ A+E + DAICDGE V I
Sbjct: 714 PSYVLGGQGMKIVINEKELEQHVVEVLKDIPDNEILLDHFLEGAIEAEADAICDGENVYI 773
Query: 776 GGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNN 835
GIM+HIE AG+HSGDS LP Y L + + +K+A L+ +GL+N+QFAVK++
Sbjct: 774 IGIMQHIEPAGIHSGDSYAVLPPYNLGDLVVRQIETFTEKIALALKTKGLINIQFAVKDD 833
Query: 836 EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPY---YSVKE 892
+VY+IE NPRA+RTVPF+ KA P A +VM G E VT PY Y++KE
Sbjct: 834 KVYVIEANPRASRTVPFICKAYKEPYVNYAVKVMLG----ENKVTDFEFKPYKKGYAIKE 889
Query: 893 VVLPFNKFPGVDPLLGPEMRSTGEVM 918
V F+KFP V+ LGPEM+STGE +
Sbjct: 890 PVFSFHKFPNVNKELGPEMKSTGEAI 915
Score = 213 bits (542), Expect = 5e-59
Identities = 145/391 (37%), Positives = 207/391 (52%), Gaps = 23/391 (5%)
Query: 562 IMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPV 621
++++G GP IGQ EFDY A+ +LRE+G ++N NP T+ TD T+D +Y P+
Sbjct: 10 VLIIGSGPIVIGQACEFDYSGSQAARSLREEGITVTLINSNPATIMTDPVTADNVYLLPL 69
Query: 622 TLEDVLEIVRIEKPK--GVIVQYGGQTPLKLARALEAAG------VPVIGTSPDAIDRAE 673
+ +++I+ E P V+ GGQT L LA + AG V +IG DAI+ AE
Sbjct: 70 EKKSLVKILE-EHPDIDCVLPTMGGQTALNLAIEADKAGIWDRFKVRMIGVDIDAIETAE 128
Query: 674 DRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEAD 733
+RE+F+ +E L + T T+ E A+EIG+PLV+RPSY LGG V E +
Sbjct: 129 NREKFKALLEELNVGVCIGKTATSFLQGKEIAQEIGFPLVIRPSYTLGGTGGGFVEKEEE 188
Query: 734 LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSGD 791
+ + S VL++ + E +++ + D G MV+I I E+ + GVH+GD
Sbjct: 189 FENALMSGLKASPTHEVLIEQSILGWKEYELEVLRDSLGNMVVICSI-ENFDPMGVHTGD 247
Query: 792 SACSLPAYTLSQEIQDVMRQQVQKLAFEL-QVRGLMNVQFAVK--NNEVYLIEVNPRAAR 848
S PA TL + MR K+ + G NVQF+V N + IE+NPR +R
Sbjct: 248 SITVAPAMTLPDTVYQEMRNLAIKMMNGIGNFAGGCNVQFSVSPDNQTIIGIEINPRVSR 307
Query: 849 TVPFVSKATGVPLAKVAARVMAGKSLAE-----QGVTKEVIPPYYSVKEVVLP---FNKF 900
+ SKATG P+AKVAA++ G +L E G T P V +P F+KF
Sbjct: 308 SSALASKATGYPIAKVAAKLAIGYNLDELKNSITGSTSAFFEPAIDYVIVKIPRWNFDKF 367
Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKA 931
G D LG M++ GEVMG+G F EA KA
Sbjct: 368 KGSDRRLGLSMKAVGEVMGIGGNFQEALQKA 398
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2556
Number of extensions: 144
Number of successful extensions: 19
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 1073
Length of database: 939
Length adjustment: 44
Effective length of query: 1029
Effective length of database: 895
Effective search space: 920955
Effective search space used: 920955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Align candidate Echvi_0768 Echvi_0768 (carbamoyl-phosphate synthase, large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.1367.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1367.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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