Alignments for a candidate for gnd in Echinicola vietnamensis KMM 6221, DSM 17526

Align phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) (characterized)
to candidate Echvi_2861 Echvi_2861 6-phosphogluconate dehydrogenase, decarboxylating

Query= BRENDA::P80859
         (469 letters)



>FitnessBrowser__Cola:Echvi_2861
          Length = 465

 Score =  479 bits (1234), Expect = e-140
 Identities = 241/468 (51%), Positives = 328/468 (70%), Gaps = 5/468 (1%)

Query: 1   MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAK-GKNVVGTYSIEE 59
           M +   G++GL VMGKNL LN+   GFSV+  +   +K     + A+ G++V G  + E+
Sbjct: 1   MKQFDFGIVGLGVMGKNLLLNMADHGFSVAGLDLDQAKAAALEEGAREGQDVKGFITAEK 60

Query: 60  FVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESG 119
           FV SL+ PR I+L+V AG   DA I SLLP LEKDDI++DGGN+Y+ DT+RR  ELA+  
Sbjct: 61  FVSSLKRPRAIMLLVPAGKPVDAAIGSLLPLLEKDDIVVDGGNSYFPDTERRFAELAKKN 120

Query: 120 IHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGH 179
           IHF G G+SGGE+GA  GPS+MPGG  +A+E ++PI EAI+AKVDGEPC TY+G   AG+
Sbjct: 121 IHFFGMGISGGEKGARFGPSMMPGGDAQAYERLRPIFEAIAAKVDGEPCVTYLGKGSAGN 180

Query: 180 YVKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFT 239
           YVKMVHNGIEYG MQLI+E+Y I+K+ LG S D++  +FA WN  EL S+L+EIT  I  
Sbjct: 181 YVKMVHNGIEYGIMQLIAETYDIMKKGLGYSDDKIQSIFASWNDTELQSFLVEITGLILQ 240

Query: 240 KKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKA 299
           KKD++TGK L+ +I D+A  KGTGKWTSQ+A+DL  P+P+I  +V  R IS  KEERV A
Sbjct: 241 KKDDDTGKQLLPLISDQARSKGTGKWTSQNAMDLQAPVPVIDMAVLMRDISKFKEERVAA 300

Query: 300 SGLLSGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAM 359
           S  L         EN +   + ++ AL+   I +YAQG  Q++ ASEEY + L   E+A 
Sbjct: 301 SKALKWAG----EENVDATADMLKNALYFGMITTYAQGMVQLRLASEEYGYGLNLEEVAK 356

Query: 360 IFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPV 419
           I+RGGCIIRAA L+  ++AY + P+L NL+LD      + + Q  +R+V+ +AV +G+P 
Sbjct: 357 IWRGGCIIRAACLEDFRKAYKKAPDLANLMLDKEIGEDLVARQKDVREVVKVAVEKGIPA 416

Query: 420 PSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEW 467
           P+  +AL+Y+D+YR+  L  N+IQAQRD+FGAH +ER DKEG+FH +W
Sbjct: 417 PALMAALSYFDAYRSDRLSTNVIQAQRDFFGAHQFERIDKEGVFHAQW 464


Lambda     K      H
   0.315    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 599
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 465
Length adjustment: 33
Effective length of query: 436
Effective length of database: 432
Effective search space:   188352
Effective search space used:   188352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_2861 Echvi_2861 (6-phosphogluconate dehydrogenase, decarboxylating)
to HMM TIGR00873 (gnd: 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44))

Software error:

../bin/blast/fastacmd -i /tmp/list.27484.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27484.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.