Alignments for a candidate for fadA in Echinicola vietnamensis KMM 6221, DSM 17526

Align Acetyl-CoA acetyltransferase; Acetoacetyl-CoA thiolase; Ergosterol biosynthesis protein 10; EC 2.3.1.9 (characterized)
to candidate Echvi_3705 Echvi_3705 acetyl-CoA acetyltransferases

Query= SwissProt::P41338
         (398 letters)



>FitnessBrowser__Cola:Echvi_3705
          Length = 393

 Score =  409 bits (1052), Expect = e-119
 Identities = 214/396 (54%), Positives = 288/396 (72%), Gaps = 5/396 (1%)

Query: 3   QNVYIVSTARTPIGSFQGSLSSKTAVELGAVALKGALAKVPELDASKDFDEIIFGNVLSA 62
           + VYI+S  RTP+GSF G LS  TAVELGA A+KGAL +       +  DE+I GNVLSA
Sbjct: 2   KEVYIISAVRTPLGSFGGKLSGLTAVELGAQAIKGALGRAQV--TPEQVDEVIMGNVLSA 59

Query: 63  NLGQAPARQVALAAGLSNHIVASTVNKVCASAMKAIILGAQSIKCGNADVVVAGGCESMT 122
           NLGQAPARQ A+ AG+  H+  +TVNKVCAS MK+++  AQSI  G +D++VAGG ESM+
Sbjct: 60  NLGQAPARQAAIGAGIGYHVPCTTVNKVCASGMKSVMFAAQSIMTGQSDIIVAGGMESMS 119

Query: 123 NAPYYMPAARAGAKFGQTVLVDGVERDGLNDAYDGLAMGVHAEKCARDWDITREQQDNFA 182
           N PYY+P AR G KFG    VDG+ +DGL++ Y    MG  A+  A++ +I+RE QD +A
Sbjct: 120 NVPYYIPKARFGYKFGNGEFVDGLAKDGLHEVYYNFPMGNCADNTAKEKNISREAQDEYA 179

Query: 183 IESYQKSQKSQKEGKFDNEIVPVTIKGFRGKPDTQVTKDEEPARLHVEKLRSARTVFQKE 242
           I+SY+++ ++ K   F +E++PVT K  +G+  T V +DEE   +  EK+ S R VF KE
Sbjct: 180 IQSYRRAAEAWKAQAFQDEVIPVTFKSRKGESIT-VDEDEEYQNVLFEKIPSLRPVFDKE 238

Query: 243 NGTVTAANASPINDGAAAVILVSEKVLKEKNLKPLAIIKGWGEAAHQPADFTWAPSLAVP 302
            GTVTAANAS +NDGAAA++L+S++  +   L+P+A I G+ +AA  P  FT AP+LA+P
Sbjct: 239 -GTVTAANASTMNDGAAALVLMSKEKAEALGLQPVAKILGFADAATDPIWFTTAPALAIP 297

Query: 303 KALKHAGIEDINSVDYFEFNEAFSVVGLVNTKILKLDPSKVNVYGGAVALGHPLGCSGAR 362
           KALK+AGI+   +VDY+E NEAFS V L N + L +   ++NV+GGAV+LGHPLG SGAR
Sbjct: 298 KALKNAGIQ-AEAVDYYEINEAFSAVALANQQELNIPNDRLNVFGGAVSLGHPLGASGAR 356

Query: 363 VVVTLLSILQQEGGKIGVAAICNGGGGASSIVIEKI 398
           ++ TL S+L+Q+GGKIGVA ICNGGGGAS++VIE +
Sbjct: 357 IMATLHSVLRQKGGKIGVAGICNGGGGASAMVIENL 392


Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 414
Number of extensions: 17
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 393
Length adjustment: 31
Effective length of query: 367
Effective length of database: 362
Effective search space:   132854
Effective search space used:   132854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_3705 Echvi_3705 (acetyl-CoA acetyltransferases)
to HMM TIGR01930 (acetyl-CoA C-acyltransferase (EC 2.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.3290.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3290.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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