Align 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 (characterized)
to candidate GFF1393 PGA1_c14100 3-dehydroquinate synthase AroB
Query= SwissProt::Q8RU74 (442 letters) >FitnessBrowser__Phaeo:GFF1393 Length = 375 Score = 279 bits (713), Expect = 1e-79 Identities = 164/363 (45%), Positives = 216/363 (59%), Gaps = 9/363 (2%) Query: 81 VEVDLGTRSYPIYIGAGLL-DQPDLLQRHIHGKRVLVVTNTTVAPLYLDKTISALTDGNP 139 V V LG R+Y + IG LL D L + +V V+T+ TVA +L+ + L Sbjct: 10 VHVALGERAYDVVIGPDLLADAGARLAPMLRRPKVAVLTDETVAAHHLEGLRAGLASAG- 68 Query: 140 NVTVESVILPDGEQFKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 199 + ++++ LP GE K + + +E +++R +A GGGVIGD+ G+AAA R Sbjct: 69 -IEMDALALPPGESTKAWPQFSRAVEWLLEQKVERGDIVIAFGGGVIGDLAGFAAAVLRR 127 Query: 200 GVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLIDTDTLNTLPDRELAS 259 GV F+QIPT+++AQVDSSVGGKTGIN P GKN+IGAF+QP VL DT L TL R+ + Sbjct: 128 GVRFVQIPTSLLAQVDSSVGGKTGINAPQGKNLIGAFHQPSLVLADTALLGTLTPRDFLA 187 Query: 260 GLAEVIKYGLIRDAEFFEWQEQNMPLLLARDPTAFTYAIKRSCENKADVVSQDEKESGVR 319 G EV+KYGL+ DAEFFEW E P L A D A A+ RS + KAD+V +DE E G R Sbjct: 188 GYGEVVKYGLLGDAEFFEWLEAQGPALAAGDMAARVEAVTRSVQMKADIVVRDETEQGDR 247 Query: 320 ATLNLGHTFGHAVETGVGYG-QWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQ 378 A LNLGHTF HA+E GYG + LHGE VA G +A ++S RLG RV+ L+ Sbjct: 248 ALLNLGHTFCHALEAATGYGDRLLHGEGVAIGCALAFELSARLGLCSQEDPSRVRAHLKA 307 Query: 379 AKLPTS----PPETMTVEMFKSIMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDE 434 + T P E E ++M DKKV DG+LR IL +G +G TGD Q A+ + Sbjct: 308 MGMKTDLADIPGELPDAEALLALMGQDKKVVDGQLRFILARG-IGQAFVTGDVPQAAVLD 366 Query: 435 TLR 437 LR Sbjct: 367 VLR 369 Lambda K H 0.318 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 357 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 442 Length of database: 375 Length adjustment: 31 Effective length of query: 411 Effective length of database: 344 Effective search space: 141384 Effective search space used: 141384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate GFF1393 PGA1_c14100 (3-dehydroquinate synthase AroB)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))
../bin/blast/fastacmd -i /tmp/list.752.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.752.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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