Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate GFF1428 Psest_1465 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Query= SwissProt::G3XD76
(344 letters)
>FitnessBrowser__psRCH2:GFF1428
Length = 344
Score = 587 bits (1514), Expect = e-172
Identities = 298/344 (86%), Positives = 318/344 (92%)
Query: 1 MSQSLFSLAFGVGTQNRQEAWLEVFYALPLLKPSSEIVAAVAPILGYAAGNQALTFTSQQ 60
MS +LFSLAFGVGTQNRQ WLEVFYA PLLKP+ E+VAAVAP+LGYA GNQA+T T+ Q
Sbjct: 1 MSATLFSLAFGVGTQNRQGDWLEVFYAQPLLKPAGELVAAVAPLLGYAGGNQAITITTSQ 60
Query: 61 AYQLADALKGIDAAQSALLSRLAESQKPLVATLLAEDAAPSSTAEAYLKLHLLSHRLVKP 120
A QLADALK +DA Q ALL+RLAESQ+PLVATLLAEDA SST EAYLKLHLLSHRL KP
Sbjct: 61 AAQLADALKPLDATQYALLTRLAESQRPLVATLLAEDAPLSSTPEAYLKLHLLSHRLAKP 120
Query: 121 HAVNLSGIFPLLPNVAWTNIGAVDLAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPA 180
H +NL+GIFPLLPNVAWTN GAVDL ELAE QLEARLKG LLEVFSVDKFPKMTDYVVPA
Sbjct: 121 HGLNLTGIFPLLPNVAWTNQGAVDLGELAERQLEARLKGDLLEVFSVDKFPKMTDYVVPA 180
Query: 181 GVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC 240
GVRIADTARVRLGAY+GEGTTVMHEGF+NFNAGT+GPGMIEGRVSAGVFVGKGSDLGGGC
Sbjct: 181 GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTQGPGMIEGRVSAGVFVGKGSDLGGGC 240
Query: 241 STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKVALLDEQNALV 300
STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRN VE+GLYITAGTKV+LLDE + LV
Sbjct: 241 STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNTVESGLYITAGTKVSLLDENDQLV 300
Query: 301 KVVKARDLAGQPDLLFRRNSQNGAVECKTNKTAIELNEALHAHN 344
KVVKAR+LAGQ DLLFRRNSQ GAVECKT+K+AIELNEALHAHN
Sbjct: 301 KVVKARELAGQSDLLFRRNSQTGAVECKTHKSAIELNEALHAHN 344
Lambda K H
0.317 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 473
Number of extensions: 17
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 344
Length adjustment: 29
Effective length of query: 315
Effective length of database: 315
Effective search space: 99225
Effective search space used: 99225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)
Align candidate GFF1428 Psest_1465 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR03536 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.330.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.330.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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