Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate GFF1541 PGA1_c15600 3-dehydroquinate dehydratase AroQ
Query= BRENDA::N1V364 (155 letters) >FitnessBrowser__Phaeo:GFF1541 Length = 149 Score = 169 bits (429), Expect = 1e-47 Identities = 79/140 (56%), Positives = 101/140 (72%) Query: 16 LLVLNGPNLNLLGTREPQIYGSDTLEDAETLAARAAEAHGLAVECLQSNHEGVLIDAIHA 75 +LVLNGPNLNLLGTR+P++YG +TL E + GL+V C QSNHEG L+DA+H Sbjct: 4 ILVLNGPNLNLLGTRQPEVYGRETLAMVEQRCVEHGHSIGLSVRCEQSNHEGALLDALHG 63 Query: 76 ARGTAAGIVINPGGYTHTSVALRDALSGVDLPVVEVHISNIHRREEFRHHSYISGIAVAV 135 ARG AG+++N G YTHTS+AL DA+ ++LPVVEVH+SNIH RE+FRH SY+S A+ Sbjct: 64 ARGVYAGVILNAGAYTHTSIALMDAIFSIELPVVEVHLSNIHAREDFRHRSYLSRAALGQ 123 Query: 136 IAGAGISGYKFAVDLLASRL 155 I G G GY A+D L + L Sbjct: 124 ICGFGAQGYIMALDALRAHL 143 Lambda K H 0.317 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 87 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 155 Length of database: 149 Length adjustment: 17 Effective length of query: 138 Effective length of database: 132 Effective search space: 18216 Effective search space used: 18216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 43 (21.2 bits)
Align candidate GFF1541 PGA1_c15600 (3-dehydroquinate dehydratase AroQ)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.16269.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16269.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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