Alignments for a candidate for hisF in Pseudomonas stutzeri RCH2

Align imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) (characterized)
to candidate GFF156 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit

Query= BRENDA::Q5NMD6
         (255 letters)



>FitnessBrowser__psRCH2:GFF156
          Length = 256

 Score =  297 bits (761), Expect = 1e-85
 Identities = 148/256 (57%), Positives = 191/256 (74%), Gaps = 5/256 (1%)

Query: 1   MTLCTRIIPCLDVADGRVVKGVNFTDLMDAGDPVEQAKVYDAAGADELCFLDISASHEGR 60
           M L  RIIPCLDV +GRVVKGV F ++ DAGDPVE A+ YD  GADE+ FLDI+AS + R
Sbjct: 1   MALAKRIIPCLDVDNGRVVKGVQFENIRDAGDPVEIARRYDEQGADEITFLDITASVDNR 60

Query: 61  GTMLDVVARTAEVCFMPLTVGGGVRQVEDARALLLAGADKVAVNSAAVARPELVAEIADR 120
            T L  V R A   F+PLTVGGGVR V+D R LL AGADKV++N+AAV  P+ V E ADR
Sbjct: 61  DTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPDFVGEAADR 120

Query: 121 FGAQCVVAAIDARR-----NGDHWEVYTHGGRRPTGINALDHALNLTRLGAGEILLTSMD 175
           FG+QC+V AIDA++         WE++THGGR+PTG++A+  A  +  LGAGEILLTSMD
Sbjct: 121 FGSQCIVVAIDAKKVSAPGEPGRWEIFTHGGRKPTGLDAVAWAKKMEDLGAGEILLTSMD 180

Query: 176 KDGTRDGYDLELTRLVADSVPVPVIASGGVGNLDHMVEGVTKGHASALLAASIFHFGQYS 235
           +DG + GYDL +TR +++++ +PVIASGGVGNL H+ +G+ +G A A+LAASIFHFG+Y+
Sbjct: 181 QDGVKSGYDLGVTRAISEALCIPVIASGGVGNLQHLADGILEGKADAVLAASIFHFGEYT 240

Query: 236 LAEAHEALAKAGLTVR 251
           + EA   LA  G+ +R
Sbjct: 241 IPEAKAYLAARGIVMR 256


Lambda     K      H
   0.320    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 237
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 256
Length adjustment: 24
Effective length of query: 231
Effective length of database: 232
Effective search space:    53592
Effective search space used:    53592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate GFF156 Psest_0156 (imidazoleglycerol phosphate synthase, cyclase subunit)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.29733.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29733.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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