Alignments for a candidate for cysK in Pseudomonas stutzeri RCH2

Align S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) (characterized)
to candidate GFF1601 Psest_1638 cysteine synthase B

Query= BRENDA::P29848
         (303 letters)



>FitnessBrowser__psRCH2:GFF1601
          Length = 300

 Score =  408 bits (1048), Expect = e-119
 Identities = 204/290 (70%), Positives = 235/290 (81%)

Query: 3   TLEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
           T+   IGNTPLV+LQR+     + I VKLEGNNPAGSVKDR ALSMI  AE RG+I+PGD
Sbjct: 7   TIADCIGNTPLVRLQRMPGKTSNTILVKLEGNNPAGSVKDRPALSMINRAELRGDIQPGD 66

Query: 63  VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 122
            LIEATSGNTGIALAM AA+KGYRM L+MPDN + ER+AAM AYGAELILV+KE+GMEGA
Sbjct: 67  TLIEATSGNTGIALAMAAAIKGYRMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEGA 126

Query: 123 RDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGV 182
           RDLAL M   G GK+LDQF N DNP AHY +TGPE+WRQT G ITHF+SSMGTTGTI GV
Sbjct: 127 RDLALKMQAEGRGKVLDQFANGDNPEAHYNSTGPELWRQTHGSITHFISSMGTTGTIMGV 186

Query: 183 SRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMR 242
           SR+L+EQ   V IVGLQP EG++IPGIRRWP EY+P I+ A  VD V+D+ Q +AE  MR
Sbjct: 187 SRYLKEQNPAVQIVGLQPMEGAAIPGIRRWPQEYLPKIYQAERVDRVVDMSQAEAEQVMR 246

Query: 243 ELAVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVF 292
            LA  EGIFCGVSSGGAVA ALR+++    A++VAIICDRGDRYLSTGV+
Sbjct: 247 RLAREEGIFCGVSSGGAVAAALRLSQEVENAVIVAIICDRGDRYLSTGVY 296


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 372
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 300
Length adjustment: 27
Effective length of query: 276
Effective length of database: 273
Effective search space:    75348
Effective search space used:    75348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate GFF1601 Psest_1638 (cysteine synthase B)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.4898.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4898.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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