Alignments for a candidate for lpd in Phaeobacter inhibens BS107

Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate GFF1715 PGA1_c17390 dihydrolipoyl dehydrogenase LpdA

Query= BRENDA::P50970
         (466 letters)



>FitnessBrowser__Phaeo:GFF1715
          Length = 464

 Score =  541 bits (1393), Expect = e-158
 Identities = 268/464 (57%), Positives = 350/464 (75%), Gaps = 3/464 (0%)

Query: 2   ADHFDLIVLGGGPGGYVAAIRAAQLNLKVALVERVHLGGICLNWGCIPTKSLLRSAEVYH 61
           A+ +D+IV+G GPGGYVAAIRAAQL LK  +VER H+GGICLNWGCIPTK+LLRS+EV+H
Sbjct: 3   AETYDVIVIGAGPGGYVAAIRAAQLGLKTCIVEREHMGGICLNWGCIPTKALLRSSEVFH 62

Query: 62  EMQNAEAYGLTSFKPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQ 121
            M+ A+ +GL +    +DLD ++ RSR VA +L+SG+  L++KNK+ V+ G   L    +
Sbjct: 63  LMERAKDFGLKADNIGYDLDAVVKRSRGVAKQLSSGIGHLMKKNKIAVVMGEATLPAKGK 122

Query: 122 MLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPAMPKKLLVIGS 181
           + V+T +G ++ L AK+I++ATGARAR+LP + +DG  +WTY HAL P  MPKKLLVIGS
Sbjct: 123 VSVKTEKGTQE-LAAKNIVLATGARARELPGLEADGDLVWTYKHALDPVRMPKKLLVIGS 181

Query: 182 GAIGIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLT 241
           GAIGIEFASFY   GA+ ++VE   ++LP+EDAE+SA+  KAF K+G++I+ ++ ++ L 
Sbjct: 182 GAIGIEFASFYNTLGADTTVVEVMDRVLPVEDAEISAFAKKAFVKQGMKIMEKAMVKQLD 241

Query: 242 PDDEGVTAEIAGADGKVTKERFSHAIVAIGVVANVENIGLDKLGIKLDRGFIAVDGFGRT 301
                VTA I    GKV K+ F   I A+G+V NVE +GLD LG+K+DR  +  D + RT
Sbjct: 242 RGKGKVTAHIE-VGGKVEKQEFDTVISAVGIVGNVEGLGLDGLGVKVDRTHVVTDEYCRT 300

Query: 302 NVDHVWAIGDVAGAPCLAHKASHQGVIAAEAIAGCDHVHPLNTQNIPGCTYARPQVASVG 361
            VD ++AIGD+AGAP LAHKASH+GV+ AE IAG  H H +  ++I GCTY +PQVASVG
Sbjct: 301 GVDGLYAIGDIAGAPWLAHKASHEGVMVAELIAG-KHAHAVKPESIAGCTYCQPQVASVG 359

Query: 362 LTEEKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEM 421
            TE KA++ GY++K+G FPFI NGKAIA G  +G VKT+FDA +G LLGAHMVGAEVTEM
Sbjct: 360 YTEAKAKELGYDIKVGRFPFIGNGKAIALGEAEGMVKTIFDAKTGELLGAHMVGAEVTEM 419

Query: 422 IQGYTVARTLETTEAEIMETIFPHPTLSEAMHESVLAAYGRALH 465
           IQGY V R LETTE ++M T+FPHPTLSE MHESVL A+ R +H
Sbjct: 420 IQGYVVGRQLETTEEDLMNTVFPHPTLSEMMHESVLDAFDRVIH 463


Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 671
Number of extensions: 35
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 464
Length adjustment: 33
Effective length of query: 433
Effective length of database: 431
Effective search space:   186623
Effective search space used:   186623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate GFF1715 PGA1_c17390 (dihydrolipoyl dehydrogenase LpdA)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.15606.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15606.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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