Alignments for a candidate for cysK in Pseudomonas stutzeri RCH2

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate GFF1816 Psest_1855 cysteine synthase A

Query= BRENDA::P0ABK5
         (323 letters)



>FitnessBrowser__psRCH2:GFF1816
          Length = 324

 Score =  452 bits (1164), Expect = e-132
 Identities = 229/325 (70%), Positives = 269/325 (82%), Gaps = 3/325 (0%)

Query: 1   MSKIFEDNSLTIGHTPLVRLNRIG--NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGV 58
           MS+IF DN+ +IG+TPLV +NR+G     I+AK+E RNP++SVKCRIGA MIWDAE  G 
Sbjct: 1   MSRIFADNARSIGNTPLVMINRLGPKGVTIMAKIEGRNPAYSVKCRIGAGMIWDAEDSGR 60

Query: 59  LKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAK 118
           +KPG+ LVEPTSGNTGI LA+VAAARGYKL LTMP +MS+ERRK+LKALGA LVLTE AK
Sbjct: 61  IKPGMTLVEPTSGNTGIGLAFVAAARGYKLMLTMPASMSLERRKVLKALGAELVLTEPAK 120

Query: 119 GMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGT 178
           GMKGAI+KA EI ASNPE+Y + QQF NP+NP IHEKTTGPEIW DTDG +DV +AGVGT
Sbjct: 121 GMKGAIEKAAEIAASNPEQYYMPQQFENPSNPAIHEKTTGPEIWNDTDGSIDVLVAGVGT 180

Query: 179 GGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPAN 238
           GGT+TGVSRYIK TKGK  +ISVAVEPT SPVI+Q LAG+E+KP PHKIQGIGAGF+P N
Sbjct: 181 GGTITGVSRYIKNTKGK-QIISVAVEPTSSPVISQTLAGDEVKPSPHKIQGIGAGFVPKN 239

Query: 239 LDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVI 298
           LDL +VD+V  + +EEA   A RLM EEGIL GIS GAA+AAA++L E      KNIVVI
Sbjct: 240 LDLSMVDRVELVDDEEAKQMALRLMREEGILCGISCGAAMAAAVRLAERPEMQGKNIVVI 299

Query: 299 LPSSGERYLSTALFADLFTEKELQQ 323
           LP SGERYLS+ LF+D+F+E+EL Q
Sbjct: 300 LPDSGERYLSSMLFSDMFSEQELVQ 324


Lambda     K      H
   0.313    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 401
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 324
Length adjustment: 28
Effective length of query: 295
Effective length of database: 296
Effective search space:    87320
Effective search space used:    87320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate GFF1816 Psest_1855 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.1754.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1754.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.