Align Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate GFF1856 PGA1_c18830 aconitate hydratase AcnA
Query= SwissProt::P70920
(906 letters)
>FitnessBrowser__Phaeo:GFF1856
Length = 895
Score = 1095 bits (2831), Expect = 0.0
Identities = 549/903 (60%), Positives = 690/903 (76%), Gaps = 19/903 (2%)
Query: 5 DSFKCKKTLKVGAKTYVYYSLPTAEKNGLKGISKLPYSMKVLLENLLRNEDGR-SVKKAD 63
D+ K ++ L G K+ YYS+P A + GL +KLP ++KV+LEN+LR EDG SV D
Sbjct: 8 DNAKTRRKLSAGGKSISYYSIPAATEAGLGDFAKLPAALKVVLENMLRFEDGGFSVSTDD 67
Query: 64 IVAVSKWLRKKSLE-HEIAFRPARVLMQDFTGVPAVVDLAAMRNAMQKLGGDAEKINPLV 122
I A ++W EIA+RPARVLMQDFTGVPAVVDLAAMR+ ++ LGGDA+KINPL
Sbjct: 68 IKAFAEWGANGGKNPREIAYRPARVLMQDFTGVPAVVDLAAMRDGIKALGGDAQKINPLN 127
Query: 123 PVDLVIDHSVIVNFFGDNKAFAKNVTEEYKQNQERYEFLKWGQAAFSNFSVVPPGTGICH 182
PVDLVIDHSV+++ FG+ +AF NV EY++N ERY+FLKWGQ AF+NF VVPPGTGICH
Sbjct: 128 PVDLVIDHSVMIDEFGNPRAFQMNVDREYERNMERYQFLKWGQGAFNNFRVVPPGTGICH 187
Query: 183 QVNLEYLSQTVWTKKEKMTVGKKTGTFEVAYPDSLVGTDSHTTMVNGLAVLGWGVGGIEA 242
QVNLEYL+QT+W+ +++ G VAYPD+LVGTDSHTTMVNG AVLGWGVGGIEA
Sbjct: 188 QVNLEYLAQTIWSDEDQ------NGDM-VAYPDTLVGTDSHTTMVNGAAVLGWGVGGIEA 240
Query: 243 EACMLGQPLSMLLPNVVGFKLKGAMKEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGLD 302
EA MLGQP+SML+P V+GF+L GAM EG T TDLVL V +MLR GVVGKFVEF+G GLD
Sbjct: 241 EAAMLGQPISMLIPEVIGFELTGAMVEGTTGTDLVLKVVEMLRAKGVVGKFVEFYGKGLD 300
Query: 303 HLSVADKATIANMAPEYGATCGFFPVDAAAIDYLKTSGRAAPRVALVQAYAKAQGLFRTA 362
L +AD+ATIANMAPEYGATCGFFP+D I YL+ +GR R+ALV+AYAK G +R A
Sbjct: 301 TLPLADRATIANMAPEYGATCGFFPIDDETIRYLRNTGRDEDRIALVEAYAKENGFWRDA 360
Query: 363 KSADPVFTETLTLDLADVVPSMAGPKRPEGRIALPSVAEGFSVALANEYKKTEEPAKRFA 422
A P++T+TL+LD+ +VP+++GPKRP+ +AL F + +K+ K A
Sbjct: 361 DYA-PIYTDTLSLDMGTIVPAISGPKRPQDYVALTGAKAAFQKEMEETFKRPM--GKEIA 417
Query: 423 VEGKKYEIGHGDVVIAAITSCTNTSNPSVLIGAGLLARNAAAKGLKAKPWVKTSLAPGSQ 482
V+G+ Y + G VVIA+ITSCTNTSNP V+IGAGL+AR AAA GL KPWVKTSLAPGSQ
Sbjct: 418 VKGEDYTMESGKVVIASITSCTNTSNPYVMIGAGLVARKAAALGLDRKPWVKTSLAPGSQ 477
Query: 483 VVAAYLADSGLQAHLDKVGFNLVGFGCTTCIGNSGPLPEEISKSINDNGIVAAAVLSGNR 542
VV+AYL + LQ LDK+GFNLVG+GCTTCIGNSGP+ +E+S +I + +VA +VLSGNR
Sbjct: 478 VVSAYLEAANLQEDLDKIGFNLVGYGCTTCIGNSGPIQQELSDAIAEGDLVATSVLSGNR 537
Query: 543 NFEGRVSPDVQANYLASPPLVVAHALAGSVTKNLAVEPLGEGKDGKPVYLKDIWPTSKEI 602
NFEGR+SPDV+ANYLASPPLVVA+ALAG++ +LA +P+ + KDG VYLKDIWP+ KEI
Sbjct: 538 NFEGRISPDVRANYLASPPLVVAYALAGTMDIDLATDPIAQDKDGNDVYLKDIWPSQKEI 597
Query: 603 NAFMKKFVTASIFKKKYADVFKGDTNWRKIKTVESETYRWNMSSTYVQNPPYFEGMKKEP 662
++ VT F KYADVFKGD W+ ++T ++ETY W +STY+QNPPYF+GM EP
Sbjct: 598 ADLVEATVTREAFLSKYADVFKGDEKWQAVETTDAETYDWPAASTYIQNPPYFQGMGTEP 657
Query: 663 EPVTDIVEARILAMFGDKITTDHISPAGSIKLTSPAGKYLSEHQVRPADFNQYGTRRGNH 722
+++I +A+ L + GD +TTDHISPAGS T+PAG+YL + QV+P +FN YG+RRGNH
Sbjct: 658 GTISNIKDAKPLLILGDMVTTDHISPAGSFATTTPAGQYLLDRQVQPREFNSYGSRRGNH 717
Query: 723 EVMMRGTFANIRIKNFMLKGADGNIPEGGLTKHWPDGEQMSIYDAAMKYQQEQVPLVVFA 782
E+MMRGTFANIRIKN ML G EGG TK PDGEQ S+Y+A+M YQ++ +PLVVF
Sbjct: 718 EIMMRGTFANIRIKNEMLDGV-----EGGYTK-GPDGEQTSVYEASMAYQEQGIPLVVFG 771
Query: 783 GAEYGNGSSRDWAAKGTRLLGVRAVICQSFERIHRSNLVGMGVLPLTFEEGTSWSSLGLK 842
G +YG GSSRDWAAKGT LLGV+AVI +SFERIHRSNLVGMGV+P F G + SL L
Sbjct: 772 GEQYGAGSSRDWAAKGTALLGVKAVIAESFERIHRSNLVGMGVIPFEFTGGDTRKSLNLT 831
Query: 843 GDEKVTLRGLVGDLKPRQKLTAEIVSGDGSLQRVSLLCRIDTLDELDYYRNGGILHYVLR 902
GDE V++ GL +KP+++++ +I GDG+ + ++L CRIDT E++Y +GG+LHYVLR
Sbjct: 832 GDETVSIHGL-DTIKPQEEVSCDITYGDGTTKTITLKCRIDTAPEIEYIEHGGVLHYVLR 890
Query: 903 KLA 905
LA
Sbjct: 891 NLA 893
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2161
Number of extensions: 112
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 906
Length of database: 895
Length adjustment: 43
Effective length of query: 863
Effective length of database: 852
Effective search space: 735276
Effective search space used: 735276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Align candidate GFF1856 PGA1_c18830 (aconitate hydratase AcnA)
to HMM TIGR01341 (acnA: aconitate hydratase 1 (EC 4.2.1.3))
../bin/blast/fastacmd -i /tmp/list.18267.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18267.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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