Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate GFF2059 Psest_2102 5-methyltetrahydrofolate--homocysteine methyltransferase
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__psRCH2:GFF2059
Length = 1230
Score = 1603 bits (4151), Expect = 0.0
Identities = 819/1229 (66%), Positives = 972/1229 (79%), Gaps = 9/1229 (0%)
Query: 2 SSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKP 61
SS+++ L+ L ERIL+LDGGMGTMIQSY+L E D+RG RFADWP D+KGNNDLL+LS+P
Sbjct: 5 SSRLQALQQALKERILILDGGMGTMIQSYKLEEEDYRGTRFADWPQDVKGNNDLLLLSRP 64
Query: 62 EVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTAR 121
++I AI AY +AGADI+ETNTFN+T ++ ADY ME L E+N A+LAR AD TA
Sbjct: 65 DIIQAIEKAYLDAGADILETNTFNATRVSQADYGMEELVYELNVEGARLAREVADAKTAE 124
Query: 122 TPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIE 181
TP++PR+VAGVLGPT+RT SISPDVN+P +RN+TFD LV Y E+T+ L+EGGADLILIE
Sbjct: 125 TPDRPRFVAGVLGPTSRTCSISPDVNNPGYRNVTFDLLVENYVEATRGLIEGGADLILIE 184
Query: 182 TVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEAL 241
T+FDTLNAKAA+FAV+ FE GVELPIMISGTITDASGRTLSGQTTEAF+NS+RHA+ +
Sbjct: 185 TIFDTLNAKAAIFAVQQVFEDEGVELPIMISGTITDASGRTLSGQTTEAFWNSVRHAKPI 244
Query: 242 TFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQA 301
+ GLNCALG +LR Y++ELS AE +V+AHPNAGLPNAFGEYD MA + E+A +
Sbjct: 245 SVGLNCALGAKDLRPYLEELSSKAETFVSAHPNAGLPNAFGEYDESPAEMAAVVEEFAAS 304
Query: 302 GFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGE 361
GFLNI+GGCCGTTP HI A++ AV PR +P+IP ACRLSGLEP I SLFVNVGE
Sbjct: 305 GFLNIIGGCCGTTPAHIQAIAEAVSKYPPRAIPDIPKACRLSGLEPFTIDRSSLFVNVGE 364
Query: 362 RTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIA 421
RTN+TGSAKF RLI+EE Y+EAL+VA QQVE GAQ+IDINMDEGMLD++AAMV FLNLIA
Sbjct: 365 RTNITGSAKFARLIREENYTEALEVALQQVEAGAQVIDINMDEGMLDSKAAMVTFLNLIA 424
Query: 422 GEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVV 481
GEPDI+RVPIMIDSSKW+VIE GLKCIQGKGIVNSISMKEGV+ F A L +RYGAAVV
Sbjct: 425 GEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFKQQAHLCKRYGAAVV 484
Query: 482 VMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQD 541
VMAFDE GQADT ARK EIC+R+Y IL EVGFPPEDIIFDPNIFA+ATGIEEHNNYA D
Sbjct: 485 VMAFDEAGQADTAARKREICKRSYDILVNEVGFPPEDIIFDPNIFAIATGIEEHNNYAVD 544
Query: 542 FIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQ 601
FI AC I+ LP+AL SGGVSNVSFSFRGN+PVREAIH+VFL++AI+ G+ MGIVNAGQ
Sbjct: 545 FIEACAYIRDNLPYALTSGGVSNVSFSFRGNNPVREAIHSVFLFHAIKAGLTMGIVNAGQ 604
Query: 602 LAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNK 661
L IYD++P ELRDAVEDV+LNR +GTE LLELA+KY+G A+ EWRS V+K
Sbjct: 605 LEIYDEIPKELRDAVEDVVLNRSANGTEGLLELADKYKGD--GSVKEAETEEWRSLPVDK 662
Query: 662 RLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKS 721
RLE++LVKGIT FI +DTEE RQQ RPIEVIEGPLM GMNVVGDLFG GKMFLPQVVKS
Sbjct: 663 RLEHALVKGITAFIVEDTEECRQQCKRPIEVIEGPLMSGMNVVGDLFGAGKMFLPQVVKS 722
Query: 722 ARVMKQAVAYLEPFIEASK-EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDL 780
ARVMKQAVA+L PFIEA K ++ + GK+++ATVKGDVHDIGKNIVGVVL CN Y++VD+
Sbjct: 723 ARVMKQAVAHLIPFIEAEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDVVDM 782
Query: 781 GVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKA 840
GVMVPAEKIL+TA D+IGLSGLITPSLDEMV+VAKEM+RQGF++PL+IGGATTSKA
Sbjct: 783 GVMVPAEKILQTAIAEKCDIIGLSGLITPSLDEMVHVAKEMQRQGFSLPLMIGGATTSKA 842
Query: 841 HTAVKIEQNY-SGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKP 899
HTAVKI+ Y + VYV +ASR VGV LLS + FV +TR+EY +R + +
Sbjct: 843 HTAVKIDPQYHNDAVVYVTDASRAVGVATTLLSKELKPAFVEKTREEYAMIRERTANRSA 902
Query: 900 RTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVE-ASIETLRNYIDWTPFFMTWSLAG 958
RT ++ A N FDW +YTP G Q +E + TL YIDWTPFF+ W LAG
Sbjct: 903 RTERLSYAQAVANKPQFDWASYTPVKPSFTGRQLLEDIDLRTLAEYIDWTPFFIAWDLAG 962
Query: 959 KYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRV-GDDIEIYRDE 1017
KYPRILEDEVVG A LF DA ML+KL EK + R V G +PAN+V DD+E+Y D
Sbjct: 963 KYPRILEDEVVGEAATALFSDAQAMLNKLIDEKLIRARAVFGFWPANQVQDDDLEVYGDG 1022
Query: 1018 TRTHVINVSHHLRQQTEK-TGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAF 1076
+ HHLRQQ K N LADFVAPK SG DY+G F T G+ + LA A+
Sbjct: 1023 GEK--LATLHHLRQQIIKPDAKPNLSLADFVAPKDSGITDYVGGFICTAGIGAEELAKAY 1080
Query: 1077 EAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPA 1136
+ + DDYN IMVKALADRLAEA AE+LH++VRK YWGYA +E LSNEELIRE Y+GIRPA
Sbjct: 1081 QDKGDDYNSIMVKALADRLAEACAEWLHQQVRKQYWGYAKDEQLSNEELIREQYKGIRPA 1140
Query: 1137 PGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQ 1196
PGYPACP+HTEK T+++LL+ + + + LTE +AM P A+VSGWYF+HP+++Y+AV +I
Sbjct: 1141 PGYPACPDHTEKGTLFQLLDADGISQVTLTEHYAMLPTAAVSGWYFAHPEAQYFAVGKID 1200
Query: 1197 RDQVEDYARRKGMSVTEVERWLAPNLGYD 1225
+DQVE Y++RKG + ERWL PNLGYD
Sbjct: 1201 KDQVESYSQRKGEDIAVSERWLMPNLGYD 1229
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3711
Number of extensions: 164
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1230
Length adjustment: 47
Effective length of query: 1180
Effective length of database: 1183
Effective search space: 1395940
Effective search space used: 1395940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate GFF2059 Psest_2102 (5-methyltetrahydrofolate--homocysteine methyltransferase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.12054.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12054.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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