Alignments for a candidate for argH in Marinobacter adhaerens HP15

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate GFF244 HP15_243 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>FitnessBrowser__Marino:GFF244
          Length = 469

 Score =  465 bits (1197), Expect = e-135
 Identities = 238/458 (51%), Positives = 311/458 (67%), Gaps = 1/458 (0%)

Query: 2   TKEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQL 61
           + E+ W  RF       + +F AS+GFD  L  +D+TGS AHA MLA  G+++++E +Q+
Sbjct: 12  SSEKPWGGRFSEPTDAFVEKFTASVGFDQRLYHHDITGSIAHATMLAEVGVLTTDERDQI 71

Query: 62  VAGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRL 121
           + GL+ ++ +   G F   V  EDVH  +E RLT+ +G  GKKLHT RSRNDQV TD RL
Sbjct: 72  IEGLKGVKADIEAGNFQWSVSLEDVHMNIEARLTDRIGITGKKLHTGRSRNDQVATDIRL 131

Query: 122 YLRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRD 181
           YLRD+I  I  EL+  Q  LLD+AE+  +T++PG+THLQ AQPV+  HHLLA+++M  RD
Sbjct: 132 YLRDEIDVIAEELKRLQTGLLDLAEREADTIMPGFTHLQTAQPVTFGHHLLAWYEMLVRD 191

Query: 182 WERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFL 241
            ERL D  +RVN+ PLG  ALAGTT+PIDR  TA+LL FD    NSLD VSDRDFAIEF 
Sbjct: 192 AERLQDCRKRVNVMPLGAAALAGTTYPIDRAMTARLLGFDRPTENSLDSVSDRDFAIEFC 251

Query: 242 CAASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRV 301
             A+L+M HLSR +EE++LW+S +F F+ L D   TGSSIMPQKKNPDVPELVRGKTGRV
Sbjct: 252 SFAALLMTHLSRFSEELVLWTSAQFDFIDLPDRFCTGSSIMPQKKNPDVPELVRGKTGRV 311

Query: 302 FGHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQ 361
            GHL ++L +MK  PLAYNKD QEDKE LFD+V+T+K  L+A   ++   +  +   +  
Sbjct: 312 NGHLISLLTLMKSQPLAYNKDNQEDKEPLFDTVDTIKGCLKAYADMI-PAIRSKADNMRV 370

Query: 362 AVTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFA 421
           A    FS ATD+ADYL  +GVPFR+A+ +VGK V   +A G+ L D+ LEE QQ      
Sbjct: 371 AAKRGFSTATDLADYLVKKGVPFRDAHEIVGKSVAFGVAEGRDLSDMTLEELQQFSDHIG 430

Query: 422 ADIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQI 459
           AD++  ++    V AR+  GGT   QV  A+  AR Q+
Sbjct: 431 ADVFHVLTLEGSVQARDHLGGTAPDQVRAAVGRARNQL 468


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 529
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 469
Length adjustment: 33
Effective length of query: 428
Effective length of database: 436
Effective search space:   186608
Effective search space used:   186608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate GFF244 HP15_243 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13815.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13815.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.