Alignments for a candidate for pobA in Phaeobacter inhibens BS107

Align p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 (characterized)
to candidate GFF269 PGA1_c02810 P-hydroxybenzoate hydroxylase PobA

Query= SwissProt::P00438
         (394 letters)



>FitnessBrowser__Phaeo:GFF269
          Length = 408

 Score =  503 bits (1295), Expect = e-147
 Identities = 247/388 (63%), Positives = 295/388 (76%)

Query: 3   TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVD 62
           TQV I+G GPSGLLL QLLH+AGID ++LERQT DYVLGRIRAGVLE G VDLLR AG  
Sbjct: 21  TQVVIVGGGPSGLLLSQLLHRAGIDTIVLERQTRDYVLGRIRAGVLEHGFVDLLRRAGAS 80

Query: 63  RRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVY 122
            RM RDG+VH G  IA  G+  RIDL   + G+TV VYGQTEVTRDL +AR+A G   ++
Sbjct: 81  ARMDRDGMVHHGFHIAHQGRLDRIDLAGSAKGQTVMVYGQTEVTRDLYDARDAMGGQIIH 140

Query: 123 QAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYP 182
           +AA V LHDL   RP VT+E+ GE  R+D  +I G DGFHG+SR+SIP++ L+ +E+VYP
Sbjct: 141 EAANVALHDLTTARPNVTYEQQGETRRIDTKFIVGADGFHGVSRKSIPSDVLQEYEKVYP 200

Query: 183 FGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYYVQVPLTEKVEDWSDERFWTE 242
           FGWLG+L+ T P + ELIYA H RGFALCS R+A  SRYY+QVPLT++VEDWSD  FW E
Sbjct: 201 FGWLGVLSQTSPAADELIYARHDRGFALCSMRNAQLSRYYIQVPLTDRVEDWSDAAFWEE 260

Query: 243 LKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
           LK RLP +VA+ L TG S+EKSIAPLRSFV EPM++G LFLAGDAAHIVPPTGAKGLNLA
Sbjct: 261 LKRRLPEDVAKGLQTGVSIEKSIAPLRSFVAEPMRYGALFLAGDAAHIVPPTGAKGLNLA 320

Query: 303 ASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQR 362
           ASD+  LY  L   ++      L+ YS   L RIWKAERFSWWMT++LHRFPD      R
Sbjct: 321 ASDIHYLYEGLSDHFQRNDDTALDSYSERALARIWKAERFSWWMTNLLHRFPDMSPADLR 380

Query: 363 IQQTELEYYLGSEAGLATIAENYVGLPY 390
           +QQ +L+Y   S+A  A++AENYVGLPY
Sbjct: 381 LQQADLDYLFSSDAAQASLAENYVGLPY 408


Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 511
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 408
Length adjustment: 31
Effective length of query: 363
Effective length of database: 377
Effective search space:   136851
Effective search space used:   136851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate GFF269 PGA1_c02810 (P-hydroxybenzoate hydroxylase PobA)
to HMM TIGR02360 (pobA: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.9437.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9437.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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