Alignments for a candidate for argI in Pseudomonas stutzeri RCH2

Align Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate GFF270 Psest_0271 ornithine carbamoyltransferase

Query= SwissProt::P08308
         (336 letters)



>FitnessBrowser__psRCH2:GFF270
          Length = 336

 Score =  593 bits (1530), Expect = e-174
 Identities = 292/336 (86%), Positives = 313/336 (93%)

Query: 1   MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRT 60
           M FN HNR+LLSLMHHS RELRYLLDLSRDLKRAKYTGTE+QHLK KNIALIFEKTSTRT
Sbjct: 1   MPFNTHNRSLLSLMHHSERELRYLLDLSRDLKRAKYTGTERQHLKGKNIALIFEKTSTRT 60

Query: 61  RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 120
           RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELA+
Sbjct: 61  RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAR 120

Query: 121 FAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKL 180
           +AGVPVFNGLTDEYHPTQM+ADV+TMREHSDKPL  ISYAYLGDARNNMGNSLLLIGAKL
Sbjct: 121 YAGVPVFNGLTDEYHPTQMIADVMTMREHSDKPLQQISYAYLGDARNNMGNSLLLIGAKL 180

Query: 181 GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEP 240
           GMDVRIAAP+ALWP  E VA C+ FA+ SGA+LTLTEDP+ AV+GVDFVHTDVWVSMGEP
Sbjct: 181 GMDVRIAAPRALWPSAEHVAACEAFAKASGARLTLTEDPRAAVQGVDFVHTDVWVSMGEP 240

Query: 241 VEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGI 300
           +EAW ERI+ LLPYQVN ++M+ATGNPR KFMHCLPAFHN ETK+GK+IA  YP+LANGI
Sbjct: 241 LEAWAERIQLLLPYQVNPQLMQATGNPRCKFMHCLPAFHNCETKIGKEIAASYPHLANGI 300

Query: 301 EVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI 336
           EVTE+VFESP  IAFEQAENRMHTIKAILVSTLA I
Sbjct: 301 EVTEEVFESPACIAFEQAENRMHTIKAILVSTLAGI 336


Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 479
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 336
Length adjustment: 28
Effective length of query: 308
Effective length of database: 308
Effective search space:    94864
Effective search space used:    94864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate GFF270 Psest_0271 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.23024.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23024.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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