Align 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate GFF2932 PGA1_c29790 3-isopropylmalate dehydratase small subunit
Query= SwissProt::Q1MA52 (202 letters) >FitnessBrowser__Phaeo:GFF2932 Length = 201 Score = 294 bits (753), Expect = 6e-85 Identities = 138/200 (69%), Positives = 165/200 (82%) Query: 1 MDKFVKLTGVAAPLPVVNVDTDMIIPKDYLKTIKRTGLGTGLFAEARYNEDGSENPDFVL 60 M+KF K+ G+AAP+P+VN+DTDMIIPK +LK+I+RTG G LF E RYN DGSE DFVL Sbjct: 1 MEKFTKIQGIAAPMPLVNIDTDMIIPKVFLKSIQRTGFGKNLFDEMRYNRDGSEIADFVL 60 Query: 61 NKPAYRDAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIK 120 NKP YRDA+IL+AGDNFGCGSSREHAPWA+ DFGIRC++STSFADIF+NN FKNGILPI Sbjct: 61 NKPQYRDAEILIAGDNFGCGSSREHAPWAIADFGIRCIVSTSFADIFFNNSFKNGILPIV 120 Query: 121 VSQEDLDKLMDDASRGSNAILTVDLENLEITGPDGGLIKFDLDEFKRHCLLNGLDDIGLT 180 + QE +D LM DA +G+NA +TVDLE EI+ DG +IKF++D FK+HCLLNGLDDIGLT Sbjct: 121 LPQEQVDLLMKDAEKGANARMTVDLEAQEISTSDGEVIKFEVDAFKKHCLLNGLDDIGLT 180 Query: 181 LEKGKAIDSFEKKNAASHPW 200 +EK +I SFE K A PW Sbjct: 181 MEKATSIASFEDKAAQERPW 200 Lambda K H 0.319 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 206 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 202 Length of database: 201 Length adjustment: 21 Effective length of query: 181 Effective length of database: 180 Effective search space: 32580 Effective search space used: 32580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)
Align candidate GFF2932 PGA1_c29790 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.30652.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30652.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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