Alignments for a candidate for thrC in Pseudomonas stutzeri RCH2

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate GFF3067 Psest_3125 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>FitnessBrowser__psRCH2:GFF3067
          Length = 469

 Score =  504 bits (1298), Expect = e-147
 Identities = 261/462 (56%), Positives = 321/462 (69%), Gaps = 2/462 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           M+Y+STRG+AP L F D LLAGLA DGGLY+P+  P+FT E+I +  G  Y E+A  V+ 
Sbjct: 1   MRYISTRGQAPALNFEDVLLAGLASDGGLYVPENLPRFTVEEIASWAGLPYHELAFRVMR 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           PF  G IP ADF++++ E YG F H A+ PL Q + NE+VLELFHGPTLAFKD A+QLL 
Sbjct: 61  PFVAGSIPDADFKQILEETYGVFAHSAIAPLRQLNGNEWVLELFHGPTLAFKDFALQLLG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R++DYVLA+RGER  I+GATSGDTG AAIE     +N DIFIL P+ RVS VQ+RQMT+ 
Sbjct: 121 RLLDYVLAKRGERVVIMGATSGDTGSAAIEGCRRCENVDIFILHPHQRVSEVQRRQMTTI 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              N+H ++IEGNFDDCQ +VK  F D  F     L  VNSINWARIM Q+VYYF AAL 
Sbjct: 181 AGDNIHNIAIEGNFDDCQEMVKASFADQAFLKGTRLVAVNSINWARIMAQIVYYFHAALQ 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LG P R+V+F+VPTGNFGDIFAGY+A+ MGLPI QLI+ATN NDIL R +    Y+   +
Sbjct: 241 LGGPARSVAFSVPTGNFGDIFAGYLARNMGLPINQLIVATNRNDILHRFMSGNRYDKDTL 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
             + SPSMDI +SSNFERLLF+ HGR+  AV  L+ G + SG  ++ E   +  R  F +
Sbjct: 301 HASLSPSMDIMVSSNFERLLFDLHGRNGKAVAELLDGFRASGKLSVEEDRWTEARKLFDS 360

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVARE-KASGTAPMVVLATAHPAKFPDAV 419
                ++T ATI  V  + G +LDPH+AIGV  ARE + S + PMV L TAHP KFPDAV
Sbjct: 361 LAVDDEQTCATIAQVFKETGEVLDPHTAIGVHAARECRRSLSIPMVTLGTAHPVKFPDAV 420

Query: 420 -KAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHH 460
            KA  G    LPA L DL +R E  TVL NELK V+ +V  H
Sbjct: 421 EKAGIGQALALPAHLADLFERGERCTVLPNELKAVQAFVGQH 462


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 551
Number of extensions: 22
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 469
Length adjustment: 33
Effective length of query: 430
Effective length of database: 436
Effective search space:   187480
Effective search space used:   187480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate GFF3067 Psest_3125 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.24863.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24863.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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