Alignments for a candidate for deoC in Phaeobacter inhibens BS107

Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate GFF3226 PGA1_c32790 putative deoxyribose-phosphate aldolase

Query= BRENDA::Q9Y315
         (318 letters)



>FitnessBrowser__Phaeo:GFF3226
          Length = 329

 Score =  371 bits (953), Expect = e-107
 Identities = 188/307 (61%), Positives = 234/307 (76%), Gaps = 4/307 (1%)

Query: 5   NRGTELDLSWISKIQVNHPAVLRRAEQIQARRTVKKEWQAAWLLKAVTFIDLTTLSGDDT 64
           N G ELDL W   ++ N  A+ RR   +  RR+VKK  QAAWLLKA+T IDLTTLSGDDT
Sbjct: 20  NPGMELDLDWALGVEANTSAIERRCATLPGRRSVKKNHQAAWLLKAITLIDLTTLSGDDT 79

Query: 65  SSNIQRLCYKAKYPIREDLLKALNMHDKGITTAAVCVYPARVCDAVKALKAAGCNIPVAS 124
              +QRLC KA+ P+R DL++AL+M    ITT AVCVY   +  AV AL   G  IPVA+
Sbjct: 80  VGRVQRLCAKARQPVRADLMQALDMEP--ITTGAVCVYHDMIETAVAALDGTG--IPVAA 135

Query: 125 VAAGFPAGQTHLKTRLEEIRLAVEDGATEIDVVINRSLVLTGQWEALYDEIRQFRKACGE 184
           V+ GFP G +    RL EI  +V+ GA EID+VI+R  VL+G W+ALYDE++ FR+ACG+
Sbjct: 136 VSTGFPGGLSPFHLRLAEIEESVKAGAKEIDIVISRRHVLSGNWQALYDEMKAFREACGD 195

Query: 185 AHLKTILATGELGTLTNVYKASMIAMMAGSDFIKTSTGKETVNATFPVAIVMLRAIRDFF 244
           AH+K ILATGELGTL NV +AS+I MMAG+DFIKTSTGKE+VNAT PV++VM+R IRD+ 
Sbjct: 196 AHVKAILATGELGTLRNVARASLICMMAGADFIKTSTGKESVNATLPVSLVMIRTIRDYH 255

Query: 245 WKTGNKIGFKPAGGIRSAKDSLAWLSLVKEELGDEWLKPELFRIGASTLLSDIERQIYHH 304
            +TG ++G+KPAGGI  AKDSL +LSL+KEELGD WL+P+LFR GAS+LL DIERQ+ HH
Sbjct: 256 ERTGYRVGYKPAGGISKAKDSLVYLSLIKEELGDRWLQPDLFRFGASSLLGDIERQLEHH 315

Query: 305 VTGRYAA 311
           VTG Y+A
Sbjct: 316 VTGAYSA 322


Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 339
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 329
Length adjustment: 28
Effective length of query: 290
Effective length of database: 301
Effective search space:    87290
Effective search space used:    87290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate GFF3226 PGA1_c32790 (putative deoxyribose-phosphate aldolase)
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.1738.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1738.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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